Merge pull request #461 from merlokk/14a_rework3

[proxmark3-svn] / client / cmddata.c

diff --git a/client/cmddata.c b/client/cmddata.c
index 964b8031bcf2c12191a131586dcee3447ac73ff4..1f548284826fb65b8fd430742ce09b5405a3305b 100644 (file)
--- a/client/cmddata.c
+++ b/client/cmddata.c
@@ -8,286 +8,305 @@
 // Data and Graph commands
 //-----------------------------------------------------------------------------
 
 // Data and Graph commands
 //-----------------------------------------------------------------------------
 

-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-#include <limits.h>
-#include "proxmark3.h"
-#include "data.h"
-#include "ui.h"
-#include "graph.h"
-#include "cmdparser.h"
+#include <stdio.h>    // also included in util.h
+#include <string.h>   // also included in util.h
+#include <inttypes.h>
+#include <limits.h>   // for CmdNorm INT_MIN && INT_MAX
+#include "data.h"     // also included in util.h
+#include "cmddata.h"

 #include "util.h"
 #include "cmdmain.h"
 #include "util.h"
 #include "cmdmain.h"

-#include "cmddata.h"
-#include "lfdemod.h"
-#include "usb_cmd.h"
+#include "proxmark3.h"
+#include "ui.h"       // for show graph controls
+#include "graph.h"    // for graph data
+#include "cmdparser.h"// already included in cmdmain.h
+#include "usb_cmd.h"  // already included in cmdmain.h and proxmark3.h
+#include "lfdemod.h"  // for demod code
+#include "loclass/cipherutils.h" // for decimating samples in getsamples
+#include "cmdlfem4x.h"// for em410x demod

 
 uint8_t DemodBuffer[MAX_DEMOD_BUF_LEN];
 
 uint8_t DemodBuffer[MAX_DEMOD_BUF_LEN];

-int DemodBufferLen;
+uint8_t g_debugMode=0;
+size_t DemodBufferLen=0;
+int g_DemodStartIdx=0;
+int g_DemodClock=0;
+

 static int CmdHelp(const char *Cmd);
 
 //set the demod buffer with given array of binary (one bit per byte)
 //by marshmellow
 static int CmdHelp(const char *Cmd);
 
 //set the demod buffer with given array of binary (one bit per byte)
 //by marshmellow

-void setDemodBuf(uint8_t *buff,int size)
+void setDemodBuf(uint8_t *buff, size_t size, size_t startIdx)

 {
 {

-       int i=0;
-       for (; i < size; ++i){
-               DemodBuffer[i]=buff[i];
+       if (buff == NULL) 
+               return;
+
+       if ( size > MAX_DEMOD_BUF_LEN - startIdx)
+               size = MAX_DEMOD_BUF_LEN - startIdx;
+
+       size_t i = 0;
+       for (; i < size; i++){
+               DemodBuffer[i]=buff[startIdx++];

        }
        DemodBufferLen=size;
        return;
 }
 
        }
        DemodBufferLen=size;
        return;
 }
 

-//by marshmellow
-void printDemodBuff()
+bool getDemodBuf(uint8_t *buff, size_t *size) {
+       if (buff == NULL) return false;
+       if (size == NULL) return false;
+       if (*size == 0) return false;
+
+       *size = (*size > DemodBufferLen) ? DemodBufferLen : *size;
+
+       memcpy(buff, DemodBuffer, *size);
+       return true;
+}
+
+// option '1' to save DemodBuffer any other to restore
+void save_restoreDB(uint8_t saveOpt)

 {
 {

-       uint32_t i = 0;
-       int bitLen = DemodBufferLen;
-       if (bitLen<16) {
-               PrintAndLog("no bits found in demod buffer");
-               return;
-       }
-       if (bitLen>512) bitLen=512; //max output to 512 bits if we have more - should be plenty
-       for (i = 0; i <= (bitLen-16); i+=16) {
-               PrintAndLog("%i%i%i%i%i%i%i%i%i%i%i%i%i%i%i%i",
-                       DemodBuffer[i],
-                       DemodBuffer[i+1],
-                       DemodBuffer[i+2],
-                       DemodBuffer[i+3],
-                       DemodBuffer[i+4],
-                       DemodBuffer[i+5],
-                       DemodBuffer[i+6],
-                       DemodBuffer[i+7],
-                       DemodBuffer[i+8],
-                       DemodBuffer[i+9],
-                       DemodBuffer[i+10],
-                       DemodBuffer[i+11],
-                       DemodBuffer[i+12],
-                       DemodBuffer[i+13],
-                       DemodBuffer[i+14],
-                       DemodBuffer[i+15]);
+       static uint8_t SavedDB[MAX_DEMOD_BUF_LEN];
+       static size_t SavedDBlen;
+       static bool DB_Saved = false;
+       static int savedDemodStartIdx = 0;
+       static int savedDemodClock = 0;
+
+       if (saveOpt == GRAPH_SAVE) { //save
+
+               memcpy(SavedDB, DemodBuffer, sizeof(DemodBuffer));
+               SavedDBlen = DemodBufferLen;
+               DB_Saved=true;
+               savedDemodStartIdx = g_DemodStartIdx;
+               savedDemodClock = g_DemodClock;
+       } else if (DB_Saved) { //restore
+               memcpy(DemodBuffer, SavedDB, sizeof(DemodBuffer));
+               DemodBufferLen = SavedDBlen;
+               g_DemodClock = savedDemodClock;
+               g_DemodStartIdx = savedDemodStartIdx;

        }
        return;
 }
 
        }
        return;
 }
 

-
-int CmdAmp(const char *Cmd)
-{
-  int i, rising, falling;
-  int max = INT_MIN, min = INT_MAX;
-
-  for (i = 10; i < GraphTraceLen; ++i) {
-    if (GraphBuffer[i] > max)
-      max = GraphBuffer[i];
-    if (GraphBuffer[i] < min)
-      min = GraphBuffer[i];
-  }
-
-  if (max != min) {
-    rising = falling= 0;
-    for (i = 0; i < GraphTraceLen; ++i) {
-      if (GraphBuffer[i + 1] < GraphBuffer[i]) {
-        if (rising) {
-          GraphBuffer[i] = max;
-          rising = 0;
-        }
-        falling = 1;
-      }
-      if (GraphBuffer[i + 1] > GraphBuffer[i]) {
-        if (falling) {
-          GraphBuffer[i] = min;
-          falling = 0;
-        }
-        rising= 1;
-      }
-    }
-  }
-  RepaintGraphWindow();
-  return 0;
-}
-
-/*
- * Generic command to demodulate ASK.
- *
- * Argument is convention: positive or negative (High mod means zero
- * or high mod means one)
- *
- * Updates the Graph trace with 0/1 values
- *
- * Arguments:
- * c : 0 or 1
- */
- //this method is dependant on all highs and lows to be the same(or clipped)  this creates issues[marshmellow] it also ignores the clock
-int Cmdaskdemod(const char *Cmd)
+int CmdSetDebugMode(const char *Cmd)

 {
 {

-  int i;
-  int c, high = 0, low = 0;
-
-  // TODO: complain if we do not give 2 arguments here !
-  // (AL - this doesn't make sense! we're only using one argument!!!)
-  sscanf(Cmd, "%i", &c);
-
-  /* Detect high and lows and clock */
-       // (AL - clock???)
-  for (i = 0; i < GraphTraceLen; ++i)
-  {
-    if (GraphBuffer[i] > high)
-      high = GraphBuffer[i];
-    else if (GraphBuffer[i] < low)
-      low = GraphBuffer[i];
-  }
-  high=abs(high*.75);
-  low=abs(low*.75);
-  if (c != 0 && c != 1) {
-    PrintAndLog("Invalid argument: %s", Cmd);
-    return 0;
-  }
-  //prime loop
-  if (GraphBuffer[0] > 0) {
-    GraphBuffer[0] = 1-c;
-  } else {
-    GraphBuffer[0] = c;
-  }
-  for (i = 1; i < GraphTraceLen; ++i) {
-    /* Transitions are detected at each peak
-     * Transitions are either:
-     * - we're low: transition if we hit a high
-     * - we're high: transition if we hit a low
-     * (we need to do it this way because some tags keep high or
-     * low for long periods, others just reach the peak and go
-     * down)
-     */
-    //[marhsmellow] change == to >= for high and <= for low for fuzz
-    if ((GraphBuffer[i] == high) && (GraphBuffer[i - 1] == c)) {
-      GraphBuffer[i] = 1 - c;
-    } else if ((GraphBuffer[i] == low) && (GraphBuffer[i - 1] == (1 - c))){
-      GraphBuffer[i] = c;
-    } else {
-      /* No transition */
-      GraphBuffer[i] = GraphBuffer[i - 1];
-    }
-  }
-  RepaintGraphWindow();
-  return 0;
+       int demod=0;
+       sscanf(Cmd, "%i", &demod);
+       g_debugMode=(uint8_t)demod;
+       return 1;
+}
+
+int usage_data_printdemodbuf(){
+               PrintAndLog("Usage: data printdemodbuffer x o <offset> l <length>");
+               PrintAndLog("Options:        ");
+               PrintAndLog("       h          This help");
+               PrintAndLog("       x          output in hex (omit for binary output)");
+               PrintAndLog("       o <offset> enter offset in # of bits");
+               PrintAndLog("       l <length> enter length to print in # of bits or hex characters respectively");
+               return 0;       

 }
 
 //by marshmellow
 }
 
 //by marshmellow

-void printBitStream(uint8_t BitStream[], uint32_t bitLen)
+void printDemodBuff(void)

 {
 {

-  uint32_t i = 0;
-  if (bitLen<16) {
-    PrintAndLog("Too few bits found: %d",bitLen);
-    return;
-  }
-  if (bitLen>512) bitLen=512;
-   for (i = 0; i <= (bitLen-16); i+=16) {
-    PrintAndLog("%i%i%i%i%i%i%i%i%i%i%i%i%i%i%i%i",
-      BitStream[i],
-      BitStream[i+1],
-      BitStream[i+2],
-      BitStream[i+3],
-      BitStream[i+4],
-      BitStream[i+5],
-      BitStream[i+6],
-      BitStream[i+7],
-      BitStream[i+8],
-      BitStream[i+9],
-      BitStream[i+10],
-      BitStream[i+11],
-      BitStream[i+12],
-      BitStream[i+13],
-      BitStream[i+14],
-      BitStream[i+15]);
-  }
+       int bitLen = DemodBufferLen;
+       if (bitLen<1) {
+               PrintAndLog("no bits found in demod buffer");
+               return;
+       }
+       if (bitLen>512) bitLen=512; //max output to 512 bits if we have more - should be plenty
+
+       char *bin = sprint_bin_break(DemodBuffer,bitLen,16);
+       PrintAndLog("%s",bin);
+

        return;
 }
        return;
 }

-//by marshmellow
-//print EM410x ID in multiple formats
-void printEM410x(uint64_t id)
+
+int CmdPrintDemodBuff(const char *Cmd)

 {
 {

-  if (id !=0){
-      uint64_t iii=1;
-      uint64_t id2lo=0; //id2hi=0,
-      uint32_t ii=0;
-      uint32_t i=0;
-      for (ii=5; ii>0;ii--){
-        for (i=0;i<8;i++){
-                                       id2lo=(id2lo<<1LL) | ((id & (iii << (i+((ii-1)*8)))) >> (i+((ii-1)*8)));
-        }
-      }
-      //output em id
-      PrintAndLog("EM TAG ID    : %010llx", id);
-      PrintAndLog("Unique TAG ID: %010llx",  id2lo); //id2hi,
-      PrintAndLog("DEZ 8        : %08lld",id & 0xFFFFFF);
-      PrintAndLog("DEZ 10       : %010lld",id & 0xFFFFFF);
-      PrintAndLog("DEZ 5.5      : %05lld.%05lld",(id>>16LL) & 0xFFFF,(id & 0xFFFF));
-      PrintAndLog("DEZ 3.5A     : %03lld.%05lld",(id>>32ll),(id & 0xFFFF));
-      PrintAndLog("DEZ 14/IK2   : %014lld",id);
-      PrintAndLog("DEZ 15/IK3   : %015lld",id2lo);
-      PrintAndLog("Other        : %05lld_%03lld_%08lld",(id&0xFFFF),((id>>16LL) & 0xFF),(id & 0xFFFFFF));
+       char hex[512]={0x00};
+       bool hexMode = false;
+       bool errors = false;
+       uint32_t offset = 0; //could be size_t but no param_get16...
+       uint32_t length = 512;
+       char cmdp = 0;
+       while(param_getchar(Cmd, cmdp) != 0x00)
+       {
+               switch(param_getchar(Cmd, cmdp))
+               {
+               case 'h':
+               case 'H':
+                       return usage_data_printdemodbuf();
+               case 'x':
+               case 'X':
+                       hexMode = true;
+                       cmdp++;
+                       break;
+               case 'o':
+               case 'O':
+                       offset = param_get32ex(Cmd, cmdp+1, 0, 10);
+                       if (!offset) errors = true;
+                       cmdp += 2;
+                       break;
+               case 'l':
+               case 'L':
+                       length = param_get32ex(Cmd, cmdp+1, 512, 10);
+                       if (!length) errors = true;
+                       cmdp += 2;
+                       break;
+               default:
+                       PrintAndLog("Unknown parameter '%c'", param_getchar(Cmd, cmdp));
+                       errors = true;
+                       break;

                }
                }

-    return;
+               if(errors) break;
+       }
+       //Validations
+       if(errors) return usage_data_printdemodbuf();
+       length = (length > (DemodBufferLen-offset)) ? DemodBufferLen-offset : length; 
+       int numBits = (length) & 0x00FFC; //make sure we don't exceed our string
+
+       if (hexMode){
+               char *buf = (char *) (DemodBuffer + offset);
+               numBits = (numBits > sizeof(hex)) ? sizeof(hex) : numBits;
+               numBits = binarraytohex(hex, buf, numBits);
+               if (numBits==0) return 0;
+               PrintAndLog("DemodBuffer: %s",hex);             
+       } else {
+               PrintAndLog("DemodBuffer:\n%s", sprint_bin_break(DemodBuffer+offset,numBits,16));
+       }
+       return 1;

 }
 
 //by marshmellow
 }
 
 //by marshmellow

-//take binary from demod buffer and see if we can find an EM410x ID
-int CmdEm410xDecode(const char *Cmd)
+//this function strictly converts >1 to 1 and <1 to 0 for each sample in the graphbuffer
+int CmdGetBitStream(const char *Cmd)

 {
 {

-  uint64_t id=0;
- // uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};
- // uint32_t i=0;
- // i=getFromGraphBuf(BitStream);
-       id = Em410xDecode(DemodBuffer,DemodBufferLen);
-  printEM410x(id);
-  if (id>0) return 1;
-  return 0;
+       int i;
+       CmdHpf(Cmd);
+       for (i = 0; i < GraphTraceLen; i++) {
+               if (GraphBuffer[i] >= 1) {
+                       GraphBuffer[i] = 1;
+               } else {
+                       GraphBuffer[i] = 0;
+               }
+       }
+       RepaintGraphWindow();
+       return 0;

 }
 
 }
 

+//by marshmellow
+//Cmd Args: Clock, invert, maxErr, maxLen as integers and amplify as char == 'a'
+//   (amp may not be needed anymore)
+//verbose will print results and demoding messages
+//emSearch will auto search for EM410x format in bitstream
+//askType switches decode: ask/raw = 0, ask/manchester = 1 
+int ASKDemod_ext(const char *Cmd, bool verbose, bool emSearch, uint8_t askType, bool *stCheck) {
+       int invert=0;
+       int clk=0;
+       int maxErr=100;
+       int maxLen=0;
+       uint8_t askamp = 0;
+       char amp = param_getchar(Cmd, 0);
+       uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};
+       sscanf(Cmd, "%i %i %i %i %c", &clk, &invert, &maxErr, &maxLen, &amp);
+       if (!maxLen) maxLen = BIGBUF_SIZE;
+       if (invert != 0 && invert != 1) {
+               PrintAndLog("Invalid argument: %s", Cmd);
+               return 0;
+       }
+       if (clk==1){
+               invert=1;
+               clk=0;
+       }
+       size_t BitLen = getFromGraphBuf(BitStream);
+       if (g_debugMode) PrintAndLog("DEBUG: Bitlen from grphbuff: %d",BitLen);
+       if (BitLen < 255) return 0;
+       if (maxLen < BitLen && maxLen != 0) BitLen = maxLen;
+       int foundclk = 0;
+       //amp before ST check
+       if (amp == 'a' || amp == 'A') {
+               askAmp(BitStream, BitLen); 
+       }
+       bool st = false;
+       size_t ststart = 0, stend = 0;
+       if (*stCheck) st = DetectST(BitStream, &BitLen, &foundclk, &ststart, &stend);
+       *stCheck = st;
+       if (st) {
+               clk = (clk == 0) ? foundclk : clk;
+               CursorCPos = ststart;
+               CursorDPos = stend;
+               if (verbose || g_debugMode) PrintAndLog("\nFound Sequence Terminator - First one is shown by orange and blue graph markers");
+               //Graph ST trim (for testing)
+               //for (int i = 0; i < BitLen; i++) {
+               //      GraphBuffer[i] = BitStream[i]-128;
+               //}
+               //RepaintGraphWindow();
+       }
+       int startIdx = 0;
+       int errCnt = askdemod_ext(BitStream, &BitLen, &clk, &invert, maxErr, askamp, askType, &startIdx);
+       if (errCnt<0 || BitLen<16){  //if fatal error (or -1)
+               if (g_debugMode) PrintAndLog("DEBUG: no data found %d, errors:%d, bitlen:%d, clock:%d",errCnt,invert,BitLen,clk);
+               return 0;
+       }
+       if (errCnt > maxErr){
+               if (g_debugMode) PrintAndLog("DEBUG: Too many errors found, errors:%d, bits:%d, clock:%d",errCnt, BitLen, clk);
+               return 0;
+       }
+       if (verbose || g_debugMode) PrintAndLog("\nUsing Clock:%d, Invert:%d, Bits Found:%d",clk,invert,BitLen);
+       //output
+       setDemodBuf(BitStream,BitLen,0);
+       setClockGrid(clk, startIdx);
+
+       if (verbose || g_debugMode){
+               if (errCnt>0) PrintAndLog("# Errors during Demoding (shown as 7 in bit stream): %d",errCnt);
+               if (askType) PrintAndLog("ASK/Manchester - Clock: %d - Decoded bitstream:",clk);
+               else PrintAndLog("ASK/Raw - Clock: %d - Decoded bitstream:",clk);
+               // Now output the bitstream to the scrollback by line of 16 bits
+               printDemodBuff();
+               
+       }
+       uint64_t lo = 0;
+       uint32_t hi = 0;
+       if (emSearch){
+               AskEm410xDecode(true, &hi, &lo);
+       }
+       return 1;
+}
+int ASKDemod(const char *Cmd, bool verbose, bool emSearch, uint8_t askType) {
+       bool st = false;
+       return ASKDemod_ext(Cmd, verbose, emSearch, askType, &st);
+}

 
 //by marshmellow
 
 //by marshmellow

-//takes 2 arguments - clock and invert both as integers
+//takes 5 arguments - clock, invert, maxErr, maxLen as integers and amplify as char == 'a'

 //attempts to demodulate ask while decoding manchester
 //prints binary found and saves in graphbuffer for further commands
 int Cmdaskmandemod(const char *Cmd)
 {
 //attempts to demodulate ask while decoding manchester
 //prints binary found and saves in graphbuffer for further commands
 int Cmdaskmandemod(const char *Cmd)
 {

-       int invert=0;
-       int clk=0;
-  uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};
-       sscanf(Cmd, "%i %i", &clk, &invert);
-  if (invert != 0 && invert != 1) {
-    PrintAndLog("Invalid argument: %s", Cmd);
-    return 0;
-  }
-
-       size_t BitLen = getFromGraphBuf(BitStream);
-  //  PrintAndLog("DEBUG: Bitlen from grphbuff: %d",BitLen);
-  int errCnt=0;
-   errCnt = askmandemod(BitStream, &BitLen,&clk,&invert);
-       if (errCnt<0||BitLen<16){  //if fatal error (or -1)
-               // PrintAndLog("no data found %d, errors:%d, bitlen:%d, clock:%d",errCnt,invert,BitLen,clk);
-    return 0;
-       }
-  PrintAndLog("\nUsing Clock: %d - Invert: %d - Bits Found: %d",clk,invert,BitLen);
-
-  //output
-  if (errCnt>0){
-    PrintAndLog("# Errors during Demoding (shown as 77 in bit stream): %d",errCnt);
-  }
-  PrintAndLog("ASK/Manchester decoded bitstream:");
-  // Now output the bitstream to the scrollback by line of 16 bits
-       setDemodBuf(BitStream,BitLen);
-       printDemodBuff();
-  uint64_t lo =0;
-  lo = Em410xDecode(BitStream,BitLen);
-  if (lo>0){
-    //set GraphBuffer for clone or sim command
-    PrintAndLog("EM410x pattern found: ");
-    printEM410x(lo);
-    return 1;
-  }
-  //if (BitLen>16) return 1;
-  return 0;
+       char cmdp = param_getchar(Cmd, 0);
+       if (strlen(Cmd) > 45 || cmdp == 'h' || cmdp == 'H') {
+               PrintAndLog("Usage:  data rawdemod am <s> [clock] <invert> [maxError] [maxLen] [amplify]");
+               PrintAndLog("     ['s'] optional, check for Sequence Terminator");
+               PrintAndLog("     [set clock as integer] optional, if not set, autodetect");
+               PrintAndLog("     <invert>, 1 to invert output");
+               PrintAndLog("     [set maximum allowed errors], default = 100");
+               PrintAndLog("     [set maximum Samples to read], default = 32768 (512 bits at rf/64)");
+               PrintAndLog("     <amplify>, 'a' to attempt demod with ask amplification, default = no amp");
+               PrintAndLog("");
+               PrintAndLog("    sample: data rawdemod am        = demod an ask/manchester tag from GraphBuffer");
+               PrintAndLog("          : data rawdemod am 32     = demod an ask/manchester tag from GraphBuffer using a clock of RF/32");
+               PrintAndLog("          : data rawdemod am 32 1   = demod an ask/manchester tag from GraphBuffer using a clock of RF/32 and inverting data");
+               PrintAndLog("          : data rawdemod am 1      = demod an ask/manchester tag from GraphBuffer while inverting data");
+               PrintAndLog("          : data rawdemod am 64 1 0 = demod an ask/manchester tag from GraphBuffer using a clock of RF/64, inverting data and allowing 0 demod errors");
+               return 0;
+       }
+       bool st = true;
+       if (Cmd[0]=='s') 
+               return ASKDemod_ext(Cmd++, true, false, 1, &st);
+       else if (Cmd[1] == 's')
+               return ASKDemod_ext(Cmd+=2, true, false, 1, &st);
+       else
+               return ASKDemod(Cmd, true, false, 1);

 }
 
 //by marshmellow
 }
 
 //by marshmellow


@@ -295,250 +314,316 @@ int Cmdaskmandemod(const char *Cmd)
 //stricktly take 10 and 01 and convert to 0 and 1
 int Cmdmandecoderaw(const char *Cmd)
 {
 //stricktly take 10 and 01 and convert to 0 and 1
 int Cmdmandecoderaw(const char *Cmd)
 {

-  int i =0;
-  int errCnt=0;
+       int i =0;
+       int errCnt=0;

        size_t size=0;
        size_t size=0;

-  uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};
-  int high=0,low=0;
+       int invert=0;
+       int maxErr = 20;
+       char cmdp = param_getchar(Cmd, 0);
+       if (strlen(Cmd) > 5 || cmdp == 'h' || cmdp == 'H') {
+               PrintAndLog("Usage:  data manrawdecode [invert] [maxErr]");
+               PrintAndLog("     Takes 10 and 01 and converts to 0 and 1 respectively");
+               PrintAndLog("     --must have binary sequence in demodbuffer (run data askrawdemod first)");
+               PrintAndLog("  [invert]  invert output");               
+               PrintAndLog("  [maxErr]  set number of errors allowed (default = 20)");         
+               PrintAndLog("");
+               PrintAndLog("    sample: data manrawdecode   = decode manchester bitstream from the demodbuffer");
+               return 0;
+       }
+       if (DemodBufferLen==0) return 0;
+       uint8_t BitStream[MAX_DEMOD_BUF_LEN]={0};
+       int high=0,low=0;

        for (;i<DemodBufferLen;++i){
                if (DemodBuffer[i]>high) high=DemodBuffer[i];
                else if(DemodBuffer[i]<low) low=DemodBuffer[i];
                BitStream[i]=DemodBuffer[i];
        for (;i<DemodBufferLen;++i){
                if (DemodBuffer[i]>high) high=DemodBuffer[i];
                else if(DemodBuffer[i]<low) low=DemodBuffer[i];
                BitStream[i]=DemodBuffer[i];

-  }
-  if (high>1 || low <0 ){
-    PrintAndLog("Error: please raw demod the wave first then mancheseter raw decode");
-    return 0;
-  }
+       }
+       if (high>7 || low <0 ){
+               PrintAndLog("Error: please raw demod the wave first then manchester raw decode");
+               return 0;
+       }
+
+       sscanf(Cmd, "%i %i", &invert, &maxErr);

        size=i;
        size=i;

-       errCnt=manrawdecode(BitStream, &size);
-  if (errCnt>=20){
-    PrintAndLog("Too many errors: %d",errCnt);
-    return 0;
-  }
-  PrintAndLog("Manchester Decoded - # errors:%d - data:",errCnt);
-       printBitStream(BitStream, size);
-  if (errCnt==0){
+       uint8_t alignPos = 0;
+       errCnt=manrawdecode(BitStream, &size, invert, &alignPos);
+       if (errCnt>=maxErr){
+               PrintAndLog("Too many errors: %d",errCnt);
+               return 0;
+       }
+       PrintAndLog("Manchester Decoded - # errors:%d - data:",errCnt);
+       PrintAndLog("%s", sprint_bin_break(BitStream, size, 16));
+       if (errCnt==0){

                uint64_t id = 0;
                uint64_t id = 0;

-               id = Em410xDecode(BitStream, size);
-               if (id>0) setDemodBuf(BitStream, size);
-               printEM410x(id);
-  }
-  return 1;
+               uint32_t hi = 0;
+               size_t idx=0;
+               if (Em410xDecode(BitStream, &size, &idx, &hi, &id)){
+                       //need to adjust to set bitstream back to manchester encoded data
+                       //setDemodBuf(BitStream, size, idx);
+
+                       printEM410x(hi, id);
+               }
+       }
+       return 1;

 }
 
 //by marshmellow
 //biphase decode
 //take 01 or 10 = 0 and 11 or 00 = 1
 }
 
 //by marshmellow
 //biphase decode
 //take 01 or 10 = 0 and 11 or 00 = 1

-//takes 1 argument "offset" default = 0 if 1 it will shift the decode by one bit
-//  since it is not like manchester and doesn't have an incorrect bit pattern we
-//  cannot determine if our decode is correct or if it should be shifted by one bit
-//  the argument offset allows us to manually shift if the output is incorrect
-//  (better would be to demod and decode at the same time so we can distinguish large
-//    width waves vs small width waves to help the decode positioning) or askbiphdemod
+//takes 2 arguments "offset" default = 0 if 1 it will shift the decode by one bit
+// and "invert" default = 0 if 1 it will invert output
+//  the argument offset allows us to manually shift if the output is incorrect - [EDIT: now auto detects]

 int CmdBiphaseDecodeRaw(const char *Cmd)
 {
 int CmdBiphaseDecodeRaw(const char *Cmd)
 {

-  int i = 0;
-  int errCnt=0;

        size_t size=0;
        size_t size=0;

-  int offset=0;
-  int high=0, low=0;
-       sscanf(Cmd, "%i", &offset);
-  uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};
-  //get graphbuffer & high and low
-       for (;i<DemodBufferLen;++i){
-               if(DemodBuffer[i]>high)high=DemodBuffer[i];
-               else if(DemodBuffer[i]<low)low=DemodBuffer[i];
-               BitStream[i]=DemodBuffer[i];
-  }
-  if (high>1 || low <0){
-    PrintAndLog("Error: please raw demod the wave first then decode");
-    return 0;
-  }
-       size=i;
-       errCnt=BiphaseRawDecode(BitStream, &size, offset);
-  if (errCnt>=20){
-    PrintAndLog("Too many errors attempting to decode: %d",errCnt);
-    return 0;
-  }
-  PrintAndLog("Biphase Decoded using offset: %d - # errors:%d - data:",offset,errCnt);
-       printBitStream(BitStream, size);
-  PrintAndLog("\nif bitstream does not look right try offset=1");
-  return 1;
-}
+       int offset=0, invert=0, maxErr=20, errCnt=0;
+       char cmdp = param_getchar(Cmd, 0);
+       if (strlen(Cmd) > 3 || cmdp == 'h' || cmdp == 'H') {
+               PrintAndLog("Usage:  data biphaserawdecode [offset] [invert] [maxErr]");
+               PrintAndLog("     Converts 10 or 01 to 1 and 11 or 00 to 0");
+               PrintAndLog("     --must have binary sequence in demodbuffer (run data askrawdemod first)");
+               PrintAndLog("     --invert for Conditional Dephase Encoding (CDP) AKA Differential Manchester");
+               PrintAndLog("");
+               PrintAndLog("     [offset <0|1>], set to 0 not to adjust start position or to 1 to adjust decode start position");
+               PrintAndLog("     [invert <0|1>], set to 1 to invert output");
+               PrintAndLog("     [maxErr int],   set max errors tolerated - default=20");
+               PrintAndLog("");
+               PrintAndLog("    sample: data biphaserawdecode     = decode biphase bitstream from the demodbuffer");
+               PrintAndLog("    sample: data biphaserawdecode 1 1 = decode biphase bitstream from the demodbuffer, set offset, and invert output");
+               return 0;
+       }
+       sscanf(Cmd, "%i %i %i", &offset, &invert, &maxErr);
+       if (DemodBufferLen==0) {
+               PrintAndLog("DemodBuffer Empty - run 'data rawdemod ar' first");
+               return 0;
+       }
+       uint8_t BitStream[MAX_DEMOD_BUF_LEN]={0};
+       size = sizeof(BitStream);
+       if ( !getDemodBuf(BitStream, &size) ) return 0;
+       errCnt=BiphaseRawDecode(BitStream, &size, &offset, invert);
+       if (errCnt<0){
+               PrintAndLog("Error during decode:%d", errCnt);
+               return 0;
+       }
+       if (errCnt>maxErr){
+               PrintAndLog("Too many errors attempting to decode: %d",errCnt);
+               return 0;
+       }

 
 

+       if (errCnt>0){
+               PrintAndLog("# Errors found during Demod (shown as 7 in bit stream): %d",errCnt);
+       }
+
+       PrintAndLog("Biphase Decoded using offset: %d - # invert:%d - data:",offset,invert);
+       PrintAndLog("%s", sprint_bin_break(BitStream, size, 16));
+       
+       if (offset) setDemodBuf(DemodBuffer,DemodBufferLen-offset, offset);  //remove first bit from raw demod
+       setClockGrid(g_DemodClock, g_DemodStartIdx + g_DemodClock*offset/2);
+       return 1;
+}

 
 //by marshmellow
 
 //by marshmellow

-//takes 2 arguments - clock and invert both as integers
-//attempts to demodulate ask only
-//prints binary found and saves in graphbuffer for further commands
-int Cmdaskrawdemod(const char *Cmd)
+// - ASK Demod then Biphase decode GraphBuffer samples
+int ASKbiphaseDemod(const char *Cmd, bool verbose)

 {
 {

-       int invert=0;
-       int clk=0;
-  uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};
-       sscanf(Cmd, "%i %i", &clk, &invert);
-  if (invert != 0 && invert != 1) {
-    PrintAndLog("Invalid argument: %s", Cmd);
-    return 0;
-  }
-       size_t BitLen = getFromGraphBuf(BitStream);
-  int errCnt=0;
-       errCnt = askrawdemod(BitStream, &BitLen,&clk,&invert);
-       if (errCnt==-1||BitLen<16){  //throw away static - allow 1 and -1 (in case of threshold command first)
-               PrintAndLog("no data found");
-    return 0;
+       //ask raw demod GraphBuffer first
+       int offset=0, clk=0, invert=0, maxErr=0;
+       sscanf(Cmd, "%i %i %i %i", &offset, &clk, &invert, &maxErr);
+
+       uint8_t BitStream[MAX_GRAPH_TRACE_LEN];   
+       size_t size = getFromGraphBuf(BitStream);
+       int startIdx = 0;
+       //invert here inverts the ask raw demoded bits which has no effect on the demod, but we need the pointer
+       int errCnt = askdemod_ext(BitStream, &size, &clk, &invert, maxErr, 0, 0, &startIdx);  
+       if ( errCnt < 0 || errCnt > maxErr ) {   
+               if (g_debugMode) PrintAndLog("DEBUG: no data or error found %d, clock: %d", errCnt, clk);  
+                       return 0;  

        }
        }

-  PrintAndLog("Using Clock: %d - invert: %d - Bits Found: %d",clk,invert,BitLen);
-    //PrintAndLog("Data start pos:%d, lastBit:%d, stop pos:%d, numBits:%d",iii,lastBit,i,bitnum);
-               //move BitStream back to DemodBuffer
-       setDemodBuf(BitStream,BitLen);

 
 

-               //output
-  if (errCnt>0){
-    PrintAndLog("# Errors during Demoding (shown as 77 in bit stream): %d",errCnt);
-  }
-  PrintAndLog("ASK demoded bitstream:");
-  // Now output the bitstream to the scrollback by line of 16 bits
-  printBitStream(BitStream,BitLen);
-
-  return 1;
+       //attempt to Biphase decode BitStream
+       errCnt = BiphaseRawDecode(BitStream, &size, &offset, invert);
+       if (errCnt < 0){
+               if (g_debugMode || verbose) PrintAndLog("Error BiphaseRawDecode: %d", errCnt);
+               return 0;
+       }
+       if (errCnt > maxErr) {
+               if (g_debugMode || verbose) PrintAndLog("Error BiphaseRawDecode too many errors: %d", errCnt);
+               return 0;
+       }
+       //success set DemodBuffer and return
+       setDemodBuf(BitStream, size, 0);
+       setClockGrid(clk, startIdx + clk*offset/2);
+       if (g_debugMode || verbose){
+               PrintAndLog("Biphase Decoded using offset: %d - clock: %d - # errors:%d - data:",offset,clk,errCnt);
+               printDemodBuff();
+       }
+       return 1;

 }
 }

-
-int CmdAutoCorr(const char *Cmd)
+//by marshmellow - see ASKbiphaseDemod
+int Cmdaskbiphdemod(const char *Cmd)

 {
 {

-  static int CorrelBuffer[MAX_GRAPH_TRACE_LEN];
+       char cmdp = param_getchar(Cmd, 0);
+       if (strlen(Cmd) > 25 || cmdp == 'h' || cmdp == 'H') {
+               PrintAndLog("Usage:  data rawdemod ab [offset] [clock] <invert> [maxError] [maxLen] <amplify>");
+               PrintAndLog("     [offset], offset to begin biphase, default=0");
+               PrintAndLog("     [set clock as integer] optional, if not set, autodetect");
+               PrintAndLog("     <invert>, 1 to invert output");
+               PrintAndLog("     [set maximum allowed errors], default = 100");
+               PrintAndLog("     [set maximum Samples to read], default = 32768 (512 bits at rf/64)");
+               PrintAndLog("     <amplify>, 'a' to attempt demod with ask amplification, default = no amp");
+               PrintAndLog("     NOTE: <invert>  can be entered as second or third argument");
+               PrintAndLog("     NOTE: <amplify> can be entered as first, second or last argument");
+               PrintAndLog("     NOTE: any other arg must have previous args set to work");
+               PrintAndLog("");
+               PrintAndLog("     NOTE: --invert for Conditional Dephase Encoding (CDP) AKA Differential Manchester");
+               PrintAndLog("");
+               PrintAndLog("    sample: data rawdemod ab              = demod an ask/biph tag from GraphBuffer");
+               PrintAndLog("          : data rawdemod ab 0 a          = demod an ask/biph tag from GraphBuffer, amplified");
+               PrintAndLog("          : data rawdemod ab 1 32         = demod an ask/biph tag from GraphBuffer using an offset of 1 and a clock of RF/32");
+               PrintAndLog("          : data rawdemod ab 0 32 1       = demod an ask/biph tag from GraphBuffer using a clock of RF/32 and inverting data");
+               PrintAndLog("          : data rawdemod ab 0 1          = demod an ask/biph tag from GraphBuffer while inverting data");
+               PrintAndLog("          : data rawdemod ab 0 64 1 0     = demod an ask/biph tag from GraphBuffer using a clock of RF/64, inverting data and allowing 0 demod errors");
+               PrintAndLog("          : data rawdemod ab 0 64 1 0 0 a = demod an ask/biph tag from GraphBuffer using a clock of RF/64, inverting data and allowing 0 demod errors, and amp");
+               return 0;
+       }
+       return ASKbiphaseDemod(Cmd, true);
+}

 
 

-  int window = atoi(Cmd);
+//by marshmellow - see ASKDemod
+int Cmdaskrawdemod(const char *Cmd)
+{
+       char cmdp = param_getchar(Cmd, 0);
+       if (strlen(Cmd) > 35 || cmdp == 'h' || cmdp == 'H') {
+               PrintAndLog("Usage:  data rawdemod ar [clock] <invert> [maxError] [maxLen] [amplify]");
+               PrintAndLog("     [set clock as integer] optional, if not set, autodetect");
+               PrintAndLog("     <invert>, 1 to invert output");
+               PrintAndLog("     [set maximum allowed errors], default = 100");
+               PrintAndLog("     [set maximum Samples to read], default = 32768 (1024 bits at rf/64)");
+               PrintAndLog("     <amplify>, 'a' to attempt demod with ask amplification, default = no amp");
+               PrintAndLog("");
+               PrintAndLog("    sample: data rawdemod ar            = demod an ask tag from GraphBuffer");
+               PrintAndLog("          : data rawdemod ar a          = demod an ask tag from GraphBuffer, amplified");
+               PrintAndLog("          : data rawdemod ar 32         = demod an ask tag from GraphBuffer using a clock of RF/32");
+               PrintAndLog("          : data rawdemod ar 32 1       = demod an ask tag from GraphBuffer using a clock of RF/32 and inverting data");
+               PrintAndLog("          : data rawdemod ar 1          = demod an ask tag from GraphBuffer while inverting data");
+               PrintAndLog("          : data rawdemod ar 64 1 0     = demod an ask tag from GraphBuffer using a clock of RF/64, inverting data and allowing 0 demod errors");
+               PrintAndLog("          : data rawdemod ar 64 1 0 0 a = demod an ask tag from GraphBuffer using a clock of RF/64, inverting data and allowing 0 demod errors, and amp");
+               return 0;
+       }
+       return ASKDemod(Cmd, true, false, 0);
+}

 
 

-  if (window == 0) {
-    PrintAndLog("needs a window");
-    return 0;
-  }
-  if (window >= GraphTraceLen) {
-    PrintAndLog("window must be smaller than trace (%d samples)",
-      GraphTraceLen);
-    return 0;
-  }
+int AutoCorrelate(const int *in, int *out, size_t len, int window, bool SaveGrph, bool verbose)
+{
+       static int CorrelBuffer[MAX_GRAPH_TRACE_LEN];
+       size_t Correlation = 0;
+       int maxSum = 0;
+       int lastMax = 0;
+       if (verbose) PrintAndLog("performing %d correlations", GraphTraceLen - window);
+       for (int i = 0; i < len - window; ++i) {
+               int sum = 0;
+               for (int j = 0; j < window; ++j) {
+                       sum += (in[j]*in[i + j]) / 256;
+               }
+               CorrelBuffer[i] = sum;
+               if (sum >= maxSum-100 && sum <= maxSum+100) {
+                       //another max
+                       Correlation = i-lastMax;
+                       lastMax = i;
+                       if (sum > maxSum) maxSum = sum;
+               } else if (sum > maxSum) {
+                       maxSum=sum;
+                       lastMax = i;
+               }
+       }
+       if (Correlation==0) {
+               //try again with wider margin
+               for (int i = 0; i < len - window; i++) {
+                       if (CorrelBuffer[i] >= maxSum-(maxSum*0.05) && CorrelBuffer[i] <= maxSum+(maxSum*0.05)) {
+                               //another max
+                               Correlation = i-lastMax;
+                               lastMax = i;
+                       }
+               }
+       }
+       if (verbose && Correlation > 0) PrintAndLog("Possible Correlation: %d samples",Correlation);

 
 

-  PrintAndLog("performing %d correlations", GraphTraceLen - window);
+       if (SaveGrph) {
+               //GraphTraceLen = GraphTraceLen - window;
+               memcpy(out, CorrelBuffer, len * sizeof(int));
+               RepaintGraphWindow();  
+       }
+       return Correlation;
+}

 
 

-  for (int i = 0; i < GraphTraceLen - window; ++i) {
-    int sum = 0;
-    for (int j = 0; j < window; ++j) {
-      sum += (GraphBuffer[j]*GraphBuffer[i + j]) / 256;
-    }
-    CorrelBuffer[i] = sum;
-  }
-  GraphTraceLen = GraphTraceLen - window;
-  memcpy(GraphBuffer, CorrelBuffer, GraphTraceLen * sizeof (int));
+int usage_data_autocorr(void)
+{
+       //print help
+       PrintAndLog("Usage: data autocorr [window] [g]");
+       PrintAndLog("Options:        ");
+       PrintAndLog("       h              This help");
+       PrintAndLog("       [window]       window length for correlation - default = 4000");
+       PrintAndLog("       g              save back to GraphBuffer (overwrite)");
+       return 0;
+}

 
 

-  RepaintGraphWindow();
-  return 0;
+int CmdAutoCorr(const char *Cmd)
+{
+       char cmdp = param_getchar(Cmd, 0);
+       if (cmdp == 'h' || cmdp == 'H') 
+               return usage_data_autocorr();
+       int window = 4000; //set default
+       char grph=0;
+       bool updateGrph = false;
+       sscanf(Cmd, "%i %c", &window, &grph);
+
+       if (window >= GraphTraceLen) {
+               PrintAndLog("window must be smaller than trace (%d samples)",
+                       GraphTraceLen);
+               return 0;
+       }
+       if (grph == 'g') updateGrph=true;
+       return AutoCorrelate(GraphBuffer, GraphBuffer, GraphTraceLen, window, updateGrph, true);

 }
 
 int CmdBitsamples(const char *Cmd)
 {
 }
 
 int CmdBitsamples(const char *Cmd)
 {

-  int cnt = 0;
-  uint8_t got[12288];
-
-  GetFromBigBuf(got,sizeof(got),0);
-  WaitForResponse(CMD_ACK,NULL);
-
-    for (int j = 0; j < sizeof(got); j++) {
-      for (int k = 0; k < 8; k++) {
-        if(got[j] & (1 << (7 - k))) {
-          GraphBuffer[cnt++] = 1;
-        } else {
-          GraphBuffer[cnt++] = 0;
-        }
-      }
-  }
-  GraphTraceLen = cnt;
-  RepaintGraphWindow();
-  return 0;
-}
-
-/*
- * Convert to a bitstream
- */
-int CmdBitstream(const char *Cmd)
-{
-  int i, j;
-  int bit;
-  int gtl;
-  int clock;
-  int low = 0;
-  int high = 0;
-  int hithigh, hitlow, first;
-
-  /* Detect high and lows and clock */
-  for (i = 0; i < GraphTraceLen; ++i)
-  {
-    if (GraphBuffer[i] > high)
-      high = GraphBuffer[i];
-    else if (GraphBuffer[i] < low)
-      low = GraphBuffer[i];
-  }
-
-  /* Get our clock */
-  clock = GetClock(Cmd, high, 1);
-  gtl = ClearGraph(0);
-
-  bit = 0;
-  for (i = 0; i < (int)(gtl / clock); ++i)
-  {
-    hithigh = 0;
-    hitlow = 0;
-    first = 1;
-    /* Find out if we hit both high and low peaks */
-    for (j = 0; j < clock; ++j)
-    {
-      if (GraphBuffer[(i * clock) + j] == high)
-        hithigh = 1;
-      else if (GraphBuffer[(i * clock) + j] == low)
-        hitlow = 1;
-      /* it doesn't count if it's the first part of our read
-         because it's really just trailing from the last sequence */
-      if (first && (hithigh || hitlow))
-        hithigh = hitlow = 0;
-      else
-        first = 0;
-
-      if (hithigh && hitlow)
-        break;
-    }
-
-    /* If we didn't hit both high and low peaks, we had a bit transition */
-    if (!hithigh || !hitlow)
-      bit ^= 1;
-
-    AppendGraph(0, clock, bit);
-       //    for (j = 0; j < (int)(clock/2); j++)
-       //      GraphBuffer[(i * clock) + j] = bit ^ 1;
-       //    for (j = (int)(clock/2); j < clock; j++)
-       //      GraphBuffer[(i * clock) + j] = bit;
-  }
-
-  RepaintGraphWindow();
-  return 0;
+       int cnt = 0;
+       uint8_t got[12288];
+
+       GetFromBigBuf(got,sizeof(got),0);
+       WaitForResponse(CMD_ACK,NULL);
+
+               for (int j = 0; j < sizeof(got); j++) {
+                       for (int k = 0; k < 8; k++) {
+                               if(got[j] & (1 << (7 - k))) {
+                                       GraphBuffer[cnt++] = 1;
+                               } else {
+                                       GraphBuffer[cnt++] = 0;
+                               }
+                       }
+       }
+       GraphTraceLen = cnt;
+       RepaintGraphWindow();
+       return 0;

 }
 
 int CmdBuffClear(const char *Cmd)
 {
 }
 
 int CmdBuffClear(const char *Cmd)
 {

-  UsbCommand c = {CMD_BUFF_CLEAR};
-  SendCommand(&c);
-  ClearGraph(true);
-  return 0;
+       UsbCommand c = {CMD_BUFF_CLEAR};
+       SendCommand(&c);
+       ClearGraph(true);
+       return 0;

 }
 
 int CmdDec(const char *Cmd)
 {
 }
 
 int CmdDec(const char *Cmd)
 {

-  for (int i = 0; i < (GraphTraceLen / 2); ++i)
-    GraphBuffer[i] = GraphBuffer[i * 2];
-  GraphTraceLen /= 2;
-  PrintAndLog("decimated by 2");
-  RepaintGraphWindow();
-  return 0;
+       for (int i = 0; i < (GraphTraceLen / 2); ++i)
+               GraphBuffer[i] = GraphBuffer[i * 2];
+       GraphTraceLen /= 2;
+       PrintAndLog("decimated by 2");
+       RepaintGraphWindow();
+       return 0;

 }
 /**
  * Undecimate - I'd call it 'interpolate', but we'll save that
 }
 /**
  * Undecimate - I'd call it 'interpolate', but we'll save that


@@ -549,581 +634,574 @@ int CmdDec(const char *Cmd)
  */
 int CmdUndec(const char *Cmd)
 {
  */
 int CmdUndec(const char *Cmd)
 {

+       if(param_getchar(Cmd, 0) == 'h')
+       {
+               PrintAndLog("Usage: data undec [factor]");
+               PrintAndLog("This function performs un-decimation, by repeating each sample N times");
+               PrintAndLog("Options:        ");
+               PrintAndLog("       h            This help");
+               PrintAndLog("       factor       The number of times to repeat each sample.[default:2]");
+               PrintAndLog("Example: 'data undec 3'");
+               return 0;
+       }
+
+       uint8_t factor = param_get8ex(Cmd, 0,2, 10);

        //We have memory, don't we?
        int swap[MAX_GRAPH_TRACE_LEN] = { 0 };
        //We have memory, don't we?
        int swap[MAX_GRAPH_TRACE_LEN] = { 0 };

-       uint32_t i = 0 ,j = 0;
-       while(j+1 < MAX_GRAPH_TRACE_LEN && i < GraphTraceLen)
+       uint32_t g_index = 0, s_index = 0;
+       while(g_index < GraphTraceLen && s_index + factor < MAX_GRAPH_TRACE_LEN)

        {
        {

-               swap[j] = GraphBuffer[i];
-               swap[j+1] = GraphBuffer[i];
-               i++;
-               j+=2;
+               int count = 0;
+               for(count = 0; count < factor && s_index + count < MAX_GRAPH_TRACE_LEN; count++)
+                       swap[s_index+count] = GraphBuffer[g_index];
+
+               s_index += count;
+               g_index++;

        }
        }

-       memcpy(GraphBuffer,swap, j);
-       GraphTraceLen = j;
-       PrintAndLog("Undecimated by 2");
+
+       memcpy(GraphBuffer, swap, s_index * sizeof(int));
+       GraphTraceLen = s_index;

        RepaintGraphWindow();
        RepaintGraphWindow();

+       return 0;
+}

 
 

-       /*
-        * Something is not right here, need to look into it,
-        * the undec seems to only operate on half the values **/
+//by marshmellow
+//shift graph zero up or down based on input + or -
+int CmdGraphShiftZero(const char *Cmd)
+{
+
+       int shift=0;
+       //set options from parameters entered with the command
+       sscanf(Cmd, "%i", &shift);
+       int shiftedVal=0;
+       for(int i = 0; i<GraphTraceLen; i++){
+               shiftedVal=GraphBuffer[i]+shift;
+               if (shiftedVal>127) 
+                       shiftedVal=127;
+               else if (shiftedVal<-127) 
+                       shiftedVal=-127;
+               GraphBuffer[i]= shiftedVal;
+       }
+       CmdNorm("");

        return 0;
 }
 
        return 0;
 }
 

+int AskEdgeDetect(const int *in, int *out, int len, int threshold) {
+       int Last = 0;
+       for(int i = 1; i<len; i++) {
+               if (in[i]-in[i-1] >= threshold) //large jump up
+                       Last = 127;
+               else if(in[i]-in[i-1] <= -1 * threshold) //large jump down
+                       Last = -127;
+               out[i-1] = Last;
+       }
+       return 0;
+}
+
+//by marshmellow
+//use large jumps in read samples to identify edges of waves and then amplify that wave to max
+//similar to dirtheshold, threshold commands 
+//takes a threshold length which is the measured length between two samples then determines an edge
+int CmdAskEdgeDetect(const char *Cmd)
+{
+       int thresLen = 25;
+       int ans = 0;
+       sscanf(Cmd, "%i", &thresLen); 
+
+       ans = AskEdgeDetect(GraphBuffer, GraphBuffer, GraphTraceLen, thresLen);
+       RepaintGraphWindow();
+       return ans;
+}
+

 /* Print our clock rate */
 // uses data from graphbuffer
 /* Print our clock rate */
 // uses data from graphbuffer

+// adjusted to take char parameter for type of modulation to find the clock - by marshmellow.

 int CmdDetectClockRate(const char *Cmd)
 {
 int CmdDetectClockRate(const char *Cmd)
 {

-  GetClock("",0,0);
-       //int clock = DetectASKClock(0);
-       //PrintAndLog("Auto-detected clock rate: %d", clock);
-  return 0;
+       char cmdp = param_getchar(Cmd, 0);
+       if (strlen(Cmd) > 6 || strlen(Cmd) == 0 || cmdp == 'h' || cmdp == 'H') {
+               PrintAndLog("Usage:  data detectclock [modulation] <clock>");
+               PrintAndLog("     [modulation as char], specify the modulation type you want to detect the clock of");
+               PrintAndLog("     <clock>             , specify the clock (optional - to get best start position only)");
+               PrintAndLog("       'a' = ask, 'f' = fsk, 'n' = nrz/direct, 'p' = psk");
+               PrintAndLog("");
+               PrintAndLog("    sample: data detectclock a    = detect the clock of an ask modulated wave in the GraphBuffer");
+               PrintAndLog("            data detectclock f    = detect the clock of an fsk modulated wave in the GraphBuffer");
+               PrintAndLog("            data detectclock p    = detect the clock of an psk modulated wave in the GraphBuffer");
+               PrintAndLog("            data detectclock n    = detect the clock of an nrz/direct modulated wave in the GraphBuffer");
+       }
+       int ans=0;
+       if (cmdp == 'a'){
+               ans = GetAskClock(Cmd+1, true, false);
+       } else if (cmdp == 'f'){
+               ans = GetFskClock("", true, false);
+       } else if (cmdp == 'n'){
+               ans = GetNrzClock("", true, false);
+       } else if (cmdp == 'p'){
+               ans = GetPskClock("", true, false);
+       } else {
+               PrintAndLog ("Please specify a valid modulation to detect the clock of - see option h for help");
+       }
+       return ans;
+}
+
+char *GetFSKType(uint8_t fchigh, uint8_t fclow, uint8_t invert)
+{
+       static char fType[8];
+       memset(fType, 0x00, 8);
+       char *fskType = fType;
+       if (fchigh==10 && fclow==8){
+               if (invert) //fsk2a
+                       memcpy(fskType, "FSK2a", 5);
+               else //fsk2
+                       memcpy(fskType, "FSK2", 4);
+       } else if (fchigh == 8 && fclow == 5) {
+               if (invert)
+                       memcpy(fskType, "FSK1", 4);
+               else
+                       memcpy(fskType, "FSK1a", 5);
+       } else {
+               memcpy(fskType, "FSK??", 5);
+       }
+       return fskType;

 }
 
 //by marshmellow
 //fsk raw demod and print binary
 }
 
 //by marshmellow
 //fsk raw demod and print binary

-//takes 4 arguments - Clock, invert, rchigh, rclow
-//defaults: clock = 50, invert=0, rchigh=10, rclow=8 (RF/10 RF/8 (fsk2a))
-int CmdFSKrawdemod(const char *Cmd)
+//takes 4 arguments - Clock, invert, fchigh, fclow
+//defaults: clock = 50, invert=1, fchigh=10, fclow=8 (RF/10 RF/8 (fsk2a))
+int FSKrawDemod(const char *Cmd, bool verbose)

 {
 {

-  //raw fsk demod  no manchester decoding no start bit finding just get binary from wave
-  //set defaults
-  int rfLen = 50;
-  int invert=0;
-  int fchigh=10;
-  int fclow=8;
-  //set options from parameters entered with the command
-       sscanf(Cmd, "%i %i %i %i", &rfLen, &invert, &fchigh, &fclow);
-
-  if (strlen(Cmd)>0 && strlen(Cmd)<=2) {
-     //rfLen=param_get8(Cmd, 0); //if rfLen option only is used
-     if (rfLen==1){
-      invert=1;   //if invert option only is used
-      rfLen = 50;
-     } else if(rfLen==0) rfLen=50;
-       }
-  PrintAndLog("Args invert: %d - Clock:%d - fchigh:%d - fclow: %d",invert,rfLen,fchigh, fclow);
-  uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};
+       //raw fsk demod  no manchester decoding no start bit finding just get binary from wave
+       uint8_t rfLen, invert, fchigh, fclow;
+       //set defaults
+       //set options from parameters entered with the command
+       rfLen = param_get8(Cmd, 0);
+       invert = param_get8(Cmd, 1);
+       fchigh = param_get8(Cmd, 2);
+       fclow = param_get8(Cmd, 3);
+
+       if (strlen(Cmd)>0 && strlen(Cmd)<=2) {
+               if (rfLen==1) {
+                       invert = 1;   //if invert option only is used
+                       rfLen = 0;
+               }
+       }
+       uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};

        size_t BitLen = getFromGraphBuf(BitStream);
        size_t BitLen = getFromGraphBuf(BitStream);

-       int size  = fskdemod(BitStream,BitLen,(uint8_t)rfLen,(uint8_t)invert,(uint8_t)fchigh,(uint8_t)fclow);
-  if (size>0){
-    PrintAndLog("FSK decoded bitstream:");
-               setDemodBuf(BitStream,size);
+       if (BitLen==0) return 0;
+       //get field clock lengths
+       uint16_t fcs=0;
+       if (!fchigh || !fclow) {
+               fcs = countFC(BitStream, BitLen, 1);
+               if (!fcs) {
+                       fchigh = 10;
+                       fclow = 8;
+               } else {
+                       fchigh = (fcs >> 8) & 0x00FF;
+                       fclow = fcs & 0x00FF;
+               }
+       }
+       //get bit clock length
+       if (!rfLen) {
+               int firstClockEdge = 0; //todo - align grid on graph with this...
+               rfLen = detectFSKClk(BitStream, BitLen, fchigh, fclow, &firstClockEdge);
+               if (!rfLen) rfLen = 50;
+       }
+       int startIdx = 0;
+       int size = fskdemod(BitStream, BitLen, rfLen, invert, fchigh, fclow, &startIdx);
+       if (size > 0) {
+               setDemodBuf(BitStream,size,0);
+               setClockGrid(rfLen, startIdx);

 
     // Now output the bitstream to the scrollback by line of 16 bits
 
     // Now output the bitstream to the scrollback by line of 16 bits

-    if(size > (8*32)+2) size = (8*32)+2; //only output a max of 8 blocks of 32 bits  most tags will have full bit stream inside that sample size
-    printBitStream(BitStream,size);
-  } else{
-    PrintAndLog("no FSK data found");
-  }
-  return 0;
-}
-
-//by marshmellow (based on existing demod + holiman's refactor)
-//HID Prox demod - FSK RF/50 with preamble of 00011101 (then manchester encoded)
-//print full HID Prox ID and some bit format details if found
-int CmdFSKdemodHID(const char *Cmd)
-{
-  //raw fsk demod no manchester decoding no start bit finding just get binary from wave
-  uint32_t hi2=0, hi=0, lo=0;
-
-  uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};
-       size_t BitLen = getFromGraphBuf(BitStream);
-  //get binary from fsk wave
-       size_t size  = HIDdemodFSK(BitStream,BitLen,&hi2,&hi,&lo);
-  if (size<0){
-    PrintAndLog("Error demoding fsk");
-    return 0;
-  }
-  if (hi2==0 && hi==0 && lo==0) return 0;
-  if (hi2 != 0){ //extra large HID tags
-               PrintAndLog("HID Prox TAG ID: %x%08x%08x (%d)",
-       (unsigned int) hi2, (unsigned int) hi, (unsigned int) lo, (unsigned int) (lo>>1) & 0xFFFF);
-               setDemodBuf(BitStream,BitLen);
-    return 1;
-  }
-  else {  //standard HID tags <38 bits
-    //Dbprintf("TAG ID: %x%08x (%d)",(unsigned int) hi, (unsigned int) lo, (unsigned int) (lo>>1) & 0xFFFF); //old print cmd
-    uint8_t fmtLen = 0;
-    uint32_t fc = 0;
-    uint32_t cardnum = 0;
-    if (((hi>>5)&1)==1){//if bit 38 is set then < 37 bit format is used
-      uint32_t lo2=0;
-      lo2=(((hi & 31) << 12) | (lo>>20)); //get bits 21-37 to check for format len bit
-      uint8_t idx3 = 1;
-      while(lo2>1){ //find last bit set to 1 (format len bit)
-        lo2=lo2>>1;
-        idx3++;
-      }
-                       fmtLen =idx3+19;
-      fc =0;
-      cardnum=0;
-      if(fmtLen==26){
-        cardnum = (lo>>1)&0xFFFF;
-        fc = (lo>>17)&0xFF;
-      }
-      if(fmtLen==34){
-        cardnum = (lo>>1)&0xFFFF;
-        fc= ((hi&1)<<15)|(lo>>17);
-      }
-      if(fmtLen==35){
-        cardnum = (lo>>1)&0xFFFFF;
-        fc = ((hi&1)<<11)|(lo>>21);
-      }
-    }
-    else { //if bit 38 is not set then 37 bit format is used
-      fmtLen = 37;
-      fc = 0;
-      cardnum = 0;
-      if(fmtLen == 37){
-        cardnum = (lo>>1)&0x7FFFF;
-        fc = ((hi&0xF)<<12)|(lo>>20);
-      }
+               if (verbose || g_debugMode) {
+                       PrintAndLog("\nUsing Clock:%u, invert:%u, fchigh:%u, fclow:%u", (unsigned int)rfLen, (unsigned int)invert, (unsigned int)fchigh, (unsigned int)fclow);
+                       PrintAndLog("%s decoded bitstream:",GetFSKType(fchigh,fclow,invert));
+                       printDemodBuff();

                }
                }

-               PrintAndLog("HID Prox TAG ID: %x%08x (%d) - Format Len: %dbit - FC: %d - Card: %d",
-      (unsigned int) hi, (unsigned int) lo, (unsigned int) (lo>>1) & 0xFFFF,
-      (unsigned int) fmtLen, (unsigned int) fc, (unsigned int) cardnum);
-               setDemodBuf(BitStream,BitLen);
-    return 1;
-  }
-  return 0;
+
+               return 1;
+       } else {
+               if (g_debugMode) PrintAndLog("no FSK data found");
+       }
+       return 0;

 }
 
 //by marshmellow
 }
 
 //by marshmellow

-//IO-Prox demod - FSK RF/64 with preamble of 000000001
-//print ioprox ID and some format details
-int CmdFSKdemodIO(const char *Cmd)
-{
-  //raw fsk demod no manchester decoding no start bit finding just get binary from wave
-  //set defaults
-       int idx=0;
-  //something in graphbuffer
-  if (GraphTraceLen < 65) return 0;
-  uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};
-       size_t BitLen = getFromGraphBuf(BitStream);
-  //get binary from fsk wave
- // PrintAndLog("DEBUG: got buff");
-       idx = IOdemodFSK(BitStream,BitLen);
-  if (idx<0){
-    //PrintAndLog("Error demoding fsk");
-    return 0;
-  }
- // PrintAndLog("DEBUG: Got IOdemodFSK");
-  if (idx==0){
-    //PrintAndLog("IO Prox Data not found - FSK Data:");
-    //if (BitLen > 92) printBitStream(BitStream,92);
-    return 0;
-  }
-    //Index map
-    //0           10          20          30          40          50          60
-    //|           |           |           |           |           |           |
-    //01234567 8 90123456 7 89012345 6 78901234 5 67890123 4 56789012 3 45678901 23
-    //-----------------------------------------------------------------------------
-    //00000000 0 11110000 1 facility 1 version* 1 code*one 1 code*two 1 ???????? 11
-    //
-    //XSF(version)facility:codeone+codetwo (raw)
-    //Handle the data
-  if (idx+64>BitLen) return 0;
-  PrintAndLog("%d%d%d%d%d%d%d%d %d",BitStream[idx],    BitStream[idx+1],  BitStream[idx+2], BitStream[idx+3], BitStream[idx+4], BitStream[idx+5], BitStream[idx+6], BitStream[idx+7], BitStream[idx+8]);
-       PrintAndLog("%d%d%d%d%d%d%d%d %d",BitStream[idx+9],  BitStream[idx+10], BitStream[idx+11],BitStream[idx+12],BitStream[idx+13],BitStream[idx+14],BitStream[idx+15],BitStream[idx+16],BitStream[idx+17]);
-  PrintAndLog("%d%d%d%d%d%d%d%d %d facility",BitStream[idx+18], BitStream[idx+19], BitStream[idx+20],BitStream[idx+21],BitStream[idx+22],BitStream[idx+23],BitStream[idx+24],BitStream[idx+25],BitStream[idx+26]);
-  PrintAndLog("%d%d%d%d%d%d%d%d %d version",BitStream[idx+27], BitStream[idx+28], BitStream[idx+29],BitStream[idx+30],BitStream[idx+31],BitStream[idx+32],BitStream[idx+33],BitStream[idx+34],BitStream[idx+35]);
-  PrintAndLog("%d%d%d%d%d%d%d%d %d code1",BitStream[idx+36], BitStream[idx+37], BitStream[idx+38],BitStream[idx+39],BitStream[idx+40],BitStream[idx+41],BitStream[idx+42],BitStream[idx+43],BitStream[idx+44]);
-  PrintAndLog("%d%d%d%d%d%d%d%d %d code2",BitStream[idx+45], BitStream[idx+46], BitStream[idx+47],BitStream[idx+48],BitStream[idx+49],BitStream[idx+50],BitStream[idx+51],BitStream[idx+52],BitStream[idx+53]);
-  PrintAndLog("%d%d%d%d%d%d%d%d %d%d checksum",BitStream[idx+54],BitStream[idx+55],BitStream[idx+56],BitStream[idx+57],BitStream[idx+58],BitStream[idx+59],BitStream[idx+60],BitStream[idx+61],BitStream[idx+62],BitStream[idx+63]);
-
-  uint32_t code = bytebits_to_byte(BitStream+idx,32);
-       uint32_t code2 = bytebits_to_byte(BitStream+idx+32,32);
-  uint8_t version = bytebits_to_byte(BitStream+idx+27,8); //14,4
-  uint8_t facilitycode = bytebits_to_byte(BitStream+idx+18,8) ;
-  uint16_t number = (bytebits_to_byte(BitStream+idx+36,8)<<8)|(bytebits_to_byte(BitStream+idx+45,8)); //36,9
-       PrintAndLog("IO Prox XSF(%02d)%02x:%05d (%08x%08x)",version,facilitycode,number,code,code2);
-       int i;
-       for (i=0;i<64;++i)
-               DemodBuffer[i]=BitStream[idx++];
-
-       DemodBufferLen=64;
-  return 1;
-}
-int CmdFSKdemod(const char *Cmd) //old CmdFSKdemod needs updating
-{
-  static const int LowTone[]  = {
-    1,  1,  1,  1,  1, -1, -1, -1, -1, -1,
-    1,  1,  1,  1,  1, -1, -1, -1, -1, -1,
-    1,  1,  1,  1,  1, -1, -1, -1, -1, -1,
-    1,  1,  1,  1,  1, -1, -1, -1, -1, -1,
-    1,  1,  1,  1,  1, -1, -1, -1, -1, -1
-  };
-  static const int HighTone[] = {
-    1,  1,  1,  1,  1,     -1, -1, -1, -1,
-    1,  1,  1,  1,         -1, -1, -1, -1,
-    1,  1,  1,  1,         -1, -1, -1, -1,
-    1,  1,  1,  1,         -1, -1, -1, -1,
-    1,  1,  1,  1,         -1, -1, -1, -1,
-    1,  1,  1,  1,     -1, -1, -1, -1, -1,
-  };
-
-  int lowLen = sizeof (LowTone) / sizeof (int);
-  int highLen = sizeof (HighTone) / sizeof (int);
-  int convLen = (highLen > lowLen) ? highLen : lowLen;
-  uint32_t hi = 0, lo = 0;
-
-  int i, j;
-  int minMark = 0, maxMark = 0;
-
-  for (i = 0; i < GraphTraceLen - convLen; ++i) {
-    int lowSum = 0, highSum = 0;
-
-    for (j = 0; j < lowLen; ++j) {
-      lowSum += LowTone[j]*GraphBuffer[i+j];
-    }
-    for (j = 0; j < highLen; ++j) {
-      highSum += HighTone[j] * GraphBuffer[i + j];
-    }
-    lowSum = abs(100 * lowSum / lowLen);
-    highSum = abs(100 * highSum / highLen);
-    GraphBuffer[i] = (highSum << 16) | lowSum;
-  }
-
-  for(i = 0; i < GraphTraceLen - convLen - 16; ++i) {
-    int lowTot = 0, highTot = 0;
-    // 10 and 8 are f_s divided by f_l and f_h, rounded
-    for (j = 0; j < 10; ++j) {
-      lowTot += (GraphBuffer[i+j] & 0xffff);
-    }
-    for (j = 0; j < 8; j++) {
-      highTot += (GraphBuffer[i + j] >> 16);
-    }
-    GraphBuffer[i] = lowTot - highTot;
-    if (GraphBuffer[i] > maxMark) maxMark = GraphBuffer[i];
-    if (GraphBuffer[i] < minMark) minMark = GraphBuffer[i];
-  }
-
-  GraphTraceLen -= (convLen + 16);
-  RepaintGraphWindow();
-
-  // Find bit-sync (3 lo followed by 3 high) (HID ONLY)
-  int max = 0, maxPos = 0;
-  for (i = 0; i < 6000; ++i) {
-    int dec = 0;
-    for (j = 0; j < 3 * lowLen; ++j) {
-      dec -= GraphBuffer[i + j];
-    }
-    for (; j < 3 * (lowLen + highLen ); ++j) {
-      dec += GraphBuffer[i + j];
-    }
-    if (dec > max) {
-      max = dec;
-      maxPos = i;
-    }
-  }
-
-  // place start of bit sync marker in graph
-  GraphBuffer[maxPos] = maxMark;
-  GraphBuffer[maxPos + 1] = minMark;
-
-  maxPos += j;
-
-  // place end of bit sync marker in graph
-  GraphBuffer[maxPos] = maxMark;
-  GraphBuffer[maxPos+1] = minMark;
-
-  PrintAndLog("actual data bits start at sample %d", maxPos);
-  PrintAndLog("length %d/%d", highLen, lowLen);
-
-       uint8_t bits[46];
-       bits[sizeof(bits)-1] = '\0';
-
-  // find bit pairs and manchester decode them
-  for (i = 0; i < arraylen(bits) - 1; ++i) {
-    int dec = 0;
-    for (j = 0; j < lowLen; ++j) {
-      dec -= GraphBuffer[maxPos + j];
-    }
-    for (; j < lowLen + highLen; ++j) {
-      dec += GraphBuffer[maxPos + j];
-    }
-    maxPos += j;
-    // place inter bit marker in graph
-    GraphBuffer[maxPos] = maxMark;
-    GraphBuffer[maxPos + 1] = minMark;
-
-    // hi and lo form a 64 bit pair
-    hi = (hi << 1) | (lo >> 31);
-    lo = (lo << 1);
-    // store decoded bit as binary (in hi/lo) and text (in bits[])
-    if(dec < 0) {
-      bits[i] = '1';
-      lo |= 1;
-    } else {
-      bits[i] = '0';
-    }
-  }
-  PrintAndLog("bits: '%s'", bits);
-  PrintAndLog("hex: %08x %08x", hi, lo);
-  return 0;
-}
-
-int CmdDetectNRZpskClockRate(const char *Cmd)
+//fsk raw demod and print binary
+//takes 4 arguments - Clock, invert, fchigh, fclow
+//defaults: clock = 50, invert=1, fchigh=10, fclow=8 (RF/10 RF/8 (fsk2a))
+int CmdFSKrawdemod(const char *Cmd)

 {
 {

-       GetNRZpskClock("",0,0);
-       return 0;
+       char cmdp = param_getchar(Cmd, 0);
+       if (strlen(Cmd) > 20 || cmdp == 'h' || cmdp == 'H') {
+               PrintAndLog("Usage:  data rawdemod fs [clock] <invert> [fchigh] [fclow]");
+               PrintAndLog("     [set clock as integer] optional, omit for autodetect.");
+               PrintAndLog("     <invert>, 1 for invert output, can be used even if the clock is omitted");
+               PrintAndLog("     [fchigh], larger field clock length, omit for autodetect");
+               PrintAndLog("     [fclow], small field clock length, omit for autodetect");
+               PrintAndLog("");
+               PrintAndLog("    sample: data rawdemod fs           = demod an fsk tag from GraphBuffer using autodetect");
+               PrintAndLog("          : data rawdemod fs 32        = demod an fsk tag from GraphBuffer using a clock of RF/32, autodetect fc");
+               PrintAndLog("          : data rawdemod fs 1         = demod an fsk tag from GraphBuffer using autodetect, invert output");   
+               PrintAndLog("          : data rawdemod fs 32 1      = demod an fsk tag from GraphBuffer using a clock of RF/32, invert output, autodetect fc");
+               PrintAndLog("          : data rawdemod fs 64 0 8 5  = demod an fsk1 RF/64 tag from GraphBuffer");
+               PrintAndLog("          : data rawdemod fs 50 0 10 8 = demod an fsk2 RF/50 tag from GraphBuffer");
+               PrintAndLog("          : data rawdemod fs 50 1 10 8 = demod an fsk2a RF/50 tag from GraphBuffer");
+               return 0;
+       }
+       return FSKrawDemod(Cmd, true);

 }
 
 }
 

-int PSKnrzDemod(const char *Cmd){
+//by marshmellow
+//attempt to psk1 demod graph buffer
+int PSKDemod(const char *Cmd, bool verbose)
+{

        int invert=0;
        int clk=0;
        int invert=0;
        int clk=0;

-       sscanf(Cmd, "%i %i", &clk, &invert);
+       int maxErr=100;
+       sscanf(Cmd, "%i %i %i", &clk, &invert, &maxErr);
+       if (clk==1){
+               invert=1;
+               clk=0;
+       }

        if (invert != 0 && invert != 1) {
        if (invert != 0 && invert != 1) {

-               PrintAndLog("Invalid argument: %s", Cmd);
-               return -1;
+               if (g_debugMode || verbose) PrintAndLog("Invalid argument: %s", Cmd);
+               return 0;

        }
        uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};
        size_t BitLen = getFromGraphBuf(BitStream);
        }
        uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};
        size_t BitLen = getFromGraphBuf(BitStream);

+       if (BitLen==0) return 0;

        int errCnt=0;
        int errCnt=0;

-       errCnt = pskNRZrawDemod(BitStream, &BitLen,&clk,&invert);
+       int startIdx = 0;
+       errCnt = pskRawDemod_ext(BitStream, &BitLen, &clk, &invert, &startIdx);
+       if (errCnt > maxErr){
+               if (g_debugMode || verbose) PrintAndLog("Too many errors found, clk: %d, invert: %d, numbits: %d, errCnt: %d",clk,invert,BitLen,errCnt);
+               return 0;
+       } 

        if (errCnt<0|| BitLen<16){  //throw away static - allow 1 and -1 (in case of threshold command first)
        if (errCnt<0|| BitLen<16){  //throw away static - allow 1 and -1 (in case of threshold command first)

-               //PrintAndLog("no data found, clk: %d, invert: %d, numbits: %d, errCnt: %d",clk,invert,BitLen,errCnt);
-               return -1;
+               if (g_debugMode || verbose) PrintAndLog("no data found, clk: %d, invert: %d, numbits: %d, errCnt: %d",clk,invert,BitLen,errCnt);
+               return 0;
+       }
+       if (verbose || g_debugMode){
+               PrintAndLog("\nUsing Clock:%d, invert:%d, Bits Found:%d",clk,invert,BitLen);
+               if (errCnt>0){
+                       PrintAndLog("# Errors during Demoding (shown as 7 in bit stream): %d",errCnt);
+               }

        }
        }

-       PrintAndLog("Tried PSK/NRZ Demod using Clock: %d - invert: %d - Bits Found: %d",clk,invert,BitLen);
-

        //prime demod buffer for output
        //prime demod buffer for output

-       setDemodBuf(BitStream,BitLen);
-       return errCnt;
+       setDemodBuf(BitStream,BitLen,0);
+       setClockGrid(clk, startIdx);
+
+       return 1;

 }
 }

-// Indala 26 bit decode
+

 // by marshmellow
 // by marshmellow

-// optional arguments - same as CmdpskNRZrawDemod (clock & invert)
-int CmdIndalaDecode(const char *Cmd)
+// takes 3 arguments - clock, invert, maxErr as integers
+// attempts to demodulate nrz only
+// prints binary found and saves in demodbuffer for further commands
+int NRZrawDemod(const char *Cmd, bool verbose)

 {
 {

-  uint8_t verbose = 1;
-  int ans;
-  if (strlen(Cmd)>0){
-    if (Cmd[0]=='0'){
-      verbose=0;
-      ans = PSKnrzDemod("32");
-    }else{
-      ans = PSKnrzDemod(Cmd);
-    }
-  } else{ //default to RF/32
-    ans = PSKnrzDemod("32");
-  }
-
-       if (ans < 0){
-               if (verbose) 
-      PrintAndLog("Error1: %d",ans);
+       int invert=0;
+       int clk=0;
+       int maxErr=100;
+       sscanf(Cmd, "%i %i %i", &clk, &invert, &maxErr);
+       if (clk==1){
+               invert=1;
+               clk=0;
+       }
+       if (invert != 0 && invert != 1) {
+               PrintAndLog("Invalid argument: %s", Cmd);

                return 0;
        }
                return 0;
        }

-       uint8_t invert=0;
-       ans = indala26decode(DemodBuffer,(size_t *) &DemodBufferLen, &invert);
-       if (ans < 1) {
-               if (verbose)
-      PrintAndLog("Error2: %d",ans);
-               return -1;
-       }
-       char showbits[251];
-       if (invert)
-    if (verbose)
-      PrintAndLog("Had to invert bits");
-       //convert UID to HEX
-       uint32_t uid1, uid2, uid3, uid4, uid5, uid6, uid7;
-       int idx;
-       uid1=0;
-       uid2=0;
-       PrintAndLog("BitLen: %d",DemodBufferLen);
-       if (DemodBufferLen==64){
-               for( idx=0; idx<64; idx++) {
-                       uid1=(uid1<<1)|(uid2>>31);
-                       if (DemodBuffer[idx] == 0) {
-                               uid2=(uid2<<1)|0;
-                               showbits[idx]='0';
-                       } else {
-                               uid2=(uid2<<1)|1;
-                               showbits[idx]='1';
-                       }
-               }
-               showbits[idx]='\0';
-               PrintAndLog("Indala UID=%s (%x%08x)", showbits, uid1, uid2);
-       }
-       else {
-               uid3=0;
-               uid4=0;
-               uid5=0;
-               uid6=0;
-               uid7=0;
-               for( idx=0; idx<DemodBufferLen; idx++) {
-                       uid1=(uid1<<1)|(uid2>>31);
-                       uid2=(uid2<<1)|(uid3>>31);
-                       uid3=(uid3<<1)|(uid4>>31);
-                       uid4=(uid4<<1)|(uid5>>31);
-                       uid5=(uid5<<1)|(uid6>>31);
-                       uid6=(uid6<<1)|(uid7>>31);
-                       if (DemodBuffer[idx] == 0) {
-                               uid7=(uid7<<1)|0;
-                               showbits[idx]='0';
-                       }
-                       else {
-                               uid7=(uid7<<1)|1;
-                               showbits[idx]='1';
-                       }
-               }
-               showbits[idx]='\0';
-               PrintAndLog("Indala UID=%s (%x%08x%08x%08x%08x%08x%08x)", showbits, uid1, uid2, uid3, uid4, uid5, uid6, uid7);
+       uint8_t BitStream[MAX_GRAPH_TRACE_LEN]={0};
+       size_t BitLen = getFromGraphBuf(BitStream);
+       if (BitLen==0) return 0;
+       int errCnt=0;
+       int clkStartIdx = 0;
+       errCnt = nrzRawDemod(BitStream, &BitLen, &clk, &invert, &clkStartIdx);
+       if (errCnt > maxErr){
+               if (g_debugMode) PrintAndLog("Too many errors found, clk: %d, invert: %d, numbits: %d, errCnt: %d",clk,invert,BitLen,errCnt);
+               return 0;
+       } 
+       if (errCnt<0 || BitLen<16){  //throw away static - allow 1 and -1 (in case of threshold command first)
+               if (g_debugMode) PrintAndLog("no data found, clk: %d, invert: %d, numbits: %d, errCnt: %d",clk,invert,BitLen,errCnt);
+               return 0;

        }
        }

-       return 1;
+       if (verbose || g_debugMode) PrintAndLog("Tried NRZ Demod using Clock: %d - invert: %d - Bits Found: %d",clk,invert,BitLen);
+       //prime demod buffer for output
+       setDemodBuf(BitStream,BitLen,0);
+       setClockGrid(clk, clkStartIdx);
+
+
+       if (errCnt>0 && (verbose || g_debugMode)) PrintAndLog("# Errors during Demoding (shown as 7 in bit stream): %d",errCnt);
+       if (verbose || g_debugMode) {
+               PrintAndLog("NRZ demoded bitstream:");
+               // Now output the bitstream to the scrollback by line of 16 bits
+               printDemodBuff();
+       }
+       return 1; 

 }
 
 }
 

-int CmdPskClean(const char *Cmd)
+int CmdNRZrawDemod(const char *Cmd)

 {
 {

-       uint8_t bitStream[MAX_GRAPH_TRACE_LEN]={0};
-       size_t bitLen = getFromGraphBuf(bitStream);
-       pskCleanWave(bitStream, bitLen);
-       setGraphBuf(bitStream, bitLen);
-       return 0;
+       char cmdp = param_getchar(Cmd, 0);
+       if (strlen(Cmd) > 16 || cmdp == 'h' || cmdp == 'H') {
+               PrintAndLog("Usage:  data rawdemod nr [clock] <0|1> [maxError]");
+               PrintAndLog("     [set clock as integer] optional, if not set, autodetect.");
+               PrintAndLog("     <invert>, 1 for invert output");
+               PrintAndLog("     [set maximum allowed errors], default = 100.");
+               PrintAndLog("");
+               PrintAndLog("    sample: data rawdemod nr        = demod a nrz/direct tag from GraphBuffer");
+               PrintAndLog("          : data rawdemod nr 32     = demod a nrz/direct tag from GraphBuffer using a clock of RF/32");
+               PrintAndLog("          : data rawdemod nr 32 1   = demod a nrz/direct tag from GraphBuffer using a clock of RF/32 and inverting data");
+               PrintAndLog("          : data rawdemod nr 1      = demod a nrz/direct tag from GraphBuffer while inverting data");
+               PrintAndLog("          : data rawdemod nr 64 1 0 = demod a nrz/direct tag from GraphBuffer using a clock of RF/64, inverting data and allowing 0 demod errors");
+               return 0;
+       }
+       return NRZrawDemod(Cmd, true);

 }
 
 }
 

-//by marshmellow
-//takes 2 arguments - clock and invert both as integers
-//attempts to demodulate ask only
-//prints binary found and saves in graphbuffer for further commands
-int CmdpskNRZrawDemod(const char *Cmd)
+// by marshmellow
+// takes 3 arguments - clock, invert, maxErr as integers
+// attempts to demodulate psk only
+// prints binary found and saves in demodbuffer for further commands
+int CmdPSK1rawDemod(const char *Cmd)

 {
 {

-  uint8_t verbose = 1;
-  int errCnt;
-  if (strlen(Cmd)>0){
-    if (Cmd[0]=='0')
-      verbose=0;
-  }
-
-  errCnt = PSKnrzDemod(Cmd);
+       int ans;
+       char cmdp = param_getchar(Cmd, 0);
+       if (strlen(Cmd) > 16 || cmdp == 'h' || cmdp == 'H') {
+               PrintAndLog("Usage:  data rawdemod p1 [clock] <0|1> [maxError]");
+               PrintAndLog("     [set clock as integer] optional, if not set, autodetect.");
+               PrintAndLog("     <invert>, 1 for invert output");
+               PrintAndLog("     [set maximum allowed errors], default = 100.");
+               PrintAndLog("");
+               PrintAndLog("    sample: data rawdemod p1        = demod a psk1 tag from GraphBuffer");
+               PrintAndLog("          : data rawdemod p1 32     = demod a psk1 tag from GraphBuffer using a clock of RF/32");
+               PrintAndLog("          : data rawdemod p1 32 1   = demod a psk1 tag from GraphBuffer using a clock of RF/32 and inverting data");
+               PrintAndLog("          : data rawdemod p1 1      = demod a psk1 tag from GraphBuffer while inverting data");
+               PrintAndLog("          : data rawdemod p1 64 1 0 = demod a psk1 tag from GraphBuffer using a clock of RF/64, inverting data and allowing 0 demod errors");
+               return 0;
+       }
+       ans = PSKDemod(Cmd, true);

        //output
        //output

-       if (errCnt<0) return 0;
-       if (errCnt>0){
-               if (verbose)
-      PrintAndLog("# Errors during Demoding (shown as 77 in bit stream): %d",errCnt);
+       if (!ans){
+               if (g_debugMode) PrintAndLog("Error demoding: %d",ans); 
+               return 0;

        }
        }

-       PrintAndLog("PSK or NRZ demoded bitstream:");
+ 
+       PrintAndLog("PSK1 demoded bitstream:");

        // Now output the bitstream to the scrollback by line of 16 bits
        printDemodBuff();
        // Now output the bitstream to the scrollback by line of 16 bits
        printDemodBuff();

+       return 1;
+}

 
 

+// by marshmellow
+// takes same args as cmdpsk1rawdemod
+int CmdPSK2rawDemod(const char *Cmd)
+{
+       int ans=0;
+       char cmdp = param_getchar(Cmd, 0);
+       if (strlen(Cmd) > 16 || cmdp == 'h' || cmdp == 'H') {
+               PrintAndLog("Usage:  data rawdemod p2 [clock] <0|1> [maxError]");
+               PrintAndLog("     [set clock as integer] optional, if not set, autodetect.");
+               PrintAndLog("     <invert>, 1 for invert output");
+               PrintAndLog("     [set maximum allowed errors], default = 100.");
+               PrintAndLog("");
+               PrintAndLog("    sample: data rawdemod p2         = demod a psk2 tag from GraphBuffer, autodetect clock");
+               PrintAndLog("          : data rawdemod p2 32      = demod a psk2 tag from GraphBuffer using a clock of RF/32");
+               PrintAndLog("          : data rawdemod p2 32 1    = demod a psk2 tag from GraphBuffer using a clock of RF/32 and inverting output");
+               PrintAndLog("          : data rawdemod p2 1       = demod a psk2 tag from GraphBuffer, autodetect clock and invert output");
+               PrintAndLog("          : data rawdemod p2 64 1 0  = demod a psk2 tag from GraphBuffer using a clock of RF/64, inverting output and allowing 0 demod errors");
+               return 0;
+       }
+       ans=PSKDemod(Cmd, true);
+       if (!ans){
+               if (g_debugMode) PrintAndLog("Error demoding: %d",ans);  
+               return 0;
+       } 
+       psk1TOpsk2(DemodBuffer, DemodBufferLen);
+       PrintAndLog("PSK2 demoded bitstream:");
+       // Now output the bitstream to the scrollback by line of 16 bits
+       printDemodBuff();  

        return 1;
 }
 
        return 1;
 }
 

+// by marshmellow - combines all raw demod functions into one menu command
+int CmdRawDemod(const char *Cmd)
+{
+       char cmdp = Cmd[0]; //param_getchar(Cmd, 0);
+
+       if (strlen(Cmd) > 35 || cmdp == 'h' || cmdp == 'H' || strlen(Cmd)<2) {
+               PrintAndLog("Usage:  data rawdemod [modulation] <help>|<options>");
+               PrintAndLog("   [modulation] as 2 char, 'ab' for ask/biphase, 'am' for ask/manchester, 'ar' for ask/raw, 'fs' for fsk, ...");           
+               PrintAndLog("         'nr' for nrz/direct, 'p1' for psk1, 'p2' for psk2");
+               PrintAndLog("   <help> as 'h', prints the help for the specific modulation");   
+               PrintAndLog("   <options> see specific modulation help for optional parameters");                               
+               PrintAndLog("");
+               PrintAndLog("    sample: data rawdemod fs h         = print help specific to fsk demod");
+               PrintAndLog("          : data rawdemod fs           = demod GraphBuffer using: fsk - autodetect");
+               PrintAndLog("          : data rawdemod ab           = demod GraphBuffer using: ask/biphase - autodetect");
+               PrintAndLog("          : data rawdemod am           = demod GraphBuffer using: ask/manchester - autodetect");
+               PrintAndLog("          : data rawdemod ar           = demod GraphBuffer using: ask/raw - autodetect");
+               PrintAndLog("          : data rawdemod nr           = demod GraphBuffer using: nrz/direct - autodetect");
+               PrintAndLog("          : data rawdemod p1           = demod GraphBuffer using: psk1 - autodetect");
+               PrintAndLog("          : data rawdemod p2           = demod GraphBuffer using: psk2 - autodetect");
+               return 0;
+       }
+       char cmdp2 = Cmd[1];
+       int ans = 0;
+       if (cmdp == 'f' && cmdp2 == 's'){
+               ans = CmdFSKrawdemod(Cmd+2);
+       } else if(cmdp == 'a' && cmdp2 == 'b'){
+               ans = Cmdaskbiphdemod(Cmd+2);
+       } else if(cmdp == 'a' && cmdp2 == 'm'){
+               ans = Cmdaskmandemod(Cmd+2);
+       } else if(cmdp == 'a' && cmdp2 == 'r'){
+               ans = Cmdaskrawdemod(Cmd+2);
+       } else if(cmdp == 'n' && cmdp2 == 'r'){
+               ans = CmdNRZrawDemod(Cmd+2);
+       } else if(cmdp == 'p' && cmdp2 == '1'){
+               ans = CmdPSK1rawDemod(Cmd+2);
+       } else if(cmdp == 'p' && cmdp2 == '2'){
+               ans = CmdPSK2rawDemod(Cmd+2);
+       } else { 
+               PrintAndLog("unknown modulation entered - see help ('h') for parameter structure");
+       }
+       return ans;
+}
+
+void setClockGrid(int clk, int offset) {
+       g_DemodStartIdx = offset;
+       g_DemodClock = clk;
+       if (g_debugMode) PrintAndLog("demodoffset %d, clk %d",offset,clk);
+
+       if (offset > clk) offset %= clk;
+       if (offset < 0) offset += clk;
+
+       if (offset > GraphTraceLen || offset < 0) return;
+       if (clk < 8 || clk > GraphTraceLen) {
+               GridLocked = false;
+               GridOffset = 0;
+               PlotGridX = 0;
+               PlotGridXdefault = 0;
+               RepaintGraphWindow();
+       } else {
+               GridLocked = true;
+               GridOffset = offset;
+               PlotGridX = clk;
+               PlotGridXdefault = clk;
+               RepaintGraphWindow();
+       }
+}
+

 int CmdGrid(const char *Cmd)
 {
 int CmdGrid(const char *Cmd)
 {

-  sscanf(Cmd, "%i %i", &PlotGridX, &PlotGridY);
-  PlotGridXdefault= PlotGridX;
-  PlotGridYdefault= PlotGridY;
-  RepaintGraphWindow();
-  return 0;
+       sscanf(Cmd, "%i %i", &PlotGridX, &PlotGridY);
+       PlotGridXdefault= PlotGridX;
+       PlotGridYdefault= PlotGridY;
+       RepaintGraphWindow();
+       return 0;
+}
+
+int CmdSetGraphMarkers(const char *Cmd) {
+       sscanf(Cmd, "%i %i", &CursorCPos, &CursorDPos);
+       RepaintGraphWindow();
+       return 0;

 }
 
 int CmdHexsamples(const char *Cmd)
 {
 }
 
 int CmdHexsamples(const char *Cmd)
 {

-  int i, j;
-  int requested = 0;
-  int offset = 0;
-  char string_buf[25];
-  char* string_ptr = string_buf;
-  uint8_t got[40000];
-
-  sscanf(Cmd, "%i %i", &requested, &offset);
-
-  /* if no args send something */
-  if (requested == 0) {
-    requested = 8;
-  }
-  if (offset + requested > sizeof(got)) {
-    PrintAndLog("Tried to read past end of buffer, <bytes> + <offset> > 40000");
-    return 0;
-       }
-
-  GetFromBigBuf(got,requested,offset);
-  WaitForResponse(CMD_ACK,NULL);
-
-  i = 0;
-  for (j = 0; j < requested; j++) {
-    i++;
-    string_ptr += sprintf(string_ptr, "%02x ", got[j]);
-    if (i == 8) {
-      *(string_ptr - 1) = '\0';    // remove the trailing space
-      PrintAndLog("%s", string_buf);
-      string_buf[0] = '\0';
-      string_ptr = string_buf;
-      i = 0;
-    }
-    if (j == requested - 1 && string_buf[0] != '\0') { // print any remaining bytes
-      *(string_ptr - 1) = '\0';
-      PrintAndLog("%s", string_buf);
-      string_buf[0] = '\0';
-  }
-       }
-  return 0;
+       int i, j;
+       int requested = 0;
+       int offset = 0;
+       char string_buf[25];
+       char* string_ptr = string_buf;
+       uint8_t got[BIGBUF_SIZE];
+
+       sscanf(Cmd, "%i %i", &requested, &offset);
+
+       /* if no args send something */
+       if (requested == 0) {
+               requested = 8;
+       }
+       if (offset + requested > sizeof(got)) {
+               PrintAndLog("Tried to read past end of buffer, <bytes> + <offset> > %d", BIGBUF_SIZE);
+               return 0;
+       }
+
+       GetFromBigBuf(got,requested,offset);
+       WaitForResponse(CMD_ACK,NULL);
+
+       i = 0;
+       for (j = 0; j < requested; j++) {
+               i++;
+               string_ptr += sprintf(string_ptr, "%02x ", got[j]);
+               if (i == 8) {
+                       *(string_ptr - 1) = '\0';    // remove the trailing space
+                       PrintAndLog("%s", string_buf);
+                       string_buf[0] = '\0';
+                       string_ptr = string_buf;
+                       i = 0;
+               }
+               if (j == requested - 1 && string_buf[0] != '\0') { // print any remaining bytes
+                       *(string_ptr - 1) = '\0';
+                       PrintAndLog("%s", string_buf);
+                       string_buf[0] = '\0';
+               }
+       }
+       return 0;

 }
 
 int CmdHide(const char *Cmd)
 {
 }
 
 int CmdHide(const char *Cmd)
 {

-  HideGraphWindow();
-  return 0;
+       HideGraphWindow();
+       return 0;

 }
 
 }
 

+//zero mean GraphBuffer

 int CmdHpf(const char *Cmd)
 {
 int CmdHpf(const char *Cmd)
 {

-  int i;
-  int accum = 0;
-
-  for (i = 10; i < GraphTraceLen; ++i)
-    accum += GraphBuffer[i];
-  accum /= (GraphTraceLen - 10);
-  for (i = 0; i < GraphTraceLen; ++i)
-    GraphBuffer[i] -= accum;
+       int i;
+       int accum = 0;

 
 

-  RepaintGraphWindow();
-  return 0;
-}
-typedef struct {
-       uint8_t * buffer;
-       uint32_t numbits;
-       uint32_t position;
-}BitstreamOut;
+       for (i = 10; i < GraphTraceLen; ++i)
+               accum += GraphBuffer[i];
+       accum /= (GraphTraceLen - 10);
+       for (i = 0; i < GraphTraceLen; ++i)
+               GraphBuffer[i] -= accum;

 
 

-bool _headBit( BitstreamOut *stream)
-{
-       int bytepos = stream->position >> 3; // divide by 8
-       int bitpos = (stream->position++) & 7; // mask out 00000111
-       return (*(stream->buffer + bytepos) >> (7-bitpos)) & 1;
+       RepaintGraphWindow();
+       return 0;

 }
 
 }
 

-uint8_t getByte(uint8_t bits_per_sample, BitstreamOut* b)
+uint8_t getByte(uint8_t bits_per_sample, BitstreamIn* b)

 {
        int i;
        uint8_t val = 0;
        for(i =0 ; i < bits_per_sample; i++)
        {
 {
        int i;
        uint8_t val = 0;
        for(i =0 ; i < bits_per_sample; i++)
        {

-               val |= (_headBit(b) << (7-i));
+               val |= (headBit(b) << (7-i));

        }
        return val;
 }
 
        }
        return val;
 }
 

-int CmdSamples(const char *Cmd)
+int getSamples(int n, bool silent)

 {
        //If we get all but the last byte in bigbuf,
        // we don't have to worry about remaining trash
        // in the last byte in case the bits-per-sample
        // does not line up on byte boundaries
 {
        //If we get all but the last byte in bigbuf,
        // we don't have to worry about remaining trash
        // in the last byte in case the bits-per-sample
        // does not line up on byte boundaries

-       uint8_t got[40000-1];

 
 

-       int n = strtol(Cmd, NULL, 0);
-       if (n == 0)
-               n = sizeof(got);
+       uint8_t got[BIGBUF_SIZE-1] = { 0 };

 
 

-       if (n > sizeof(got))
+       if (n == 0 || n > sizeof(got))

                n = sizeof(got);
 
                n = sizeof(got);
 

-       PrintAndLog("Reading %d bytes from device memory\n", n);
+       if (!silent) PrintAndLog("Reading %d bytes from device memory\n", n);

        GetFromBigBuf(got,n,0);
        GetFromBigBuf(got,n,0);

-       PrintAndLog("Data fetched");
+       if (!silent) PrintAndLog("Data fetched");

        UsbCommand response;
        WaitForResponse(CMD_ACK, &response);
        uint8_t bits_per_sample = 8;
        UsbCommand response;
        WaitForResponse(CMD_ACK, &response);
        uint8_t bits_per_sample = 8;


@@ -1132,16 +1210,16 @@ int CmdSamples(const char *Cmd)
        if(response.arg[0] > 0)
        {
                sample_config *sc = (sample_config *) response.d.asBytes;
        if(response.arg[0] > 0)
        {
                sample_config *sc = (sample_config *) response.d.asBytes;

-               PrintAndLog("Samples @ %d bits/smpl, decimation 1:%d ", sc->bits_per_sample
-                                       , sc->decimation);
+               if (!silent) PrintAndLog("Samples @ %d bits/smpl, decimation 1:%d ", sc->bits_per_sample
+                   , sc->decimation);

                bits_per_sample = sc->bits_per_sample;
        }
        if(bits_per_sample < 8)
        {
                bits_per_sample = sc->bits_per_sample;
        }
        if(bits_per_sample < 8)
        {

-               PrintAndLog("Unpacking...");
-               BitstreamOut bout = { got, bits_per_sample * n,  0};
+               if (!silent) PrintAndLog("Unpacking...");
+               BitstreamIn bout = { got, bits_per_sample * n,  0};

                int j =0;
                int j =0;

-               for (j = 0; j * bits_per_sample < n * 8 && j < sizeof(GraphBuffer); j++) {
+               for (j = 0; j * bits_per_sample < n * 8 && j < n; j++) {

                        uint8_t sample = getByte(bits_per_sample, &bout);
                        GraphBuffer[j] = ((int) sample )- 128;
                }
                        uint8_t sample = getByte(bits_per_sample, &bout);
                        GraphBuffer[j] = ((int) sample )- 128;
                }


@@ -1155,16 +1233,34 @@ int CmdSamples(const char *Cmd)
                GraphTraceLen = n;
        }
 
                GraphTraceLen = n;
        }
 

+       setClockGrid(0,0);
+       DemodBufferLen = 0;

        RepaintGraphWindow();
        return 0;
 }
 
        RepaintGraphWindow();
        return 0;
 }
 

+int CmdSamples(const char *Cmd)
+{
+       int n = strtol(Cmd, NULL, 0);
+       return getSamples(n, false);
+}
+

 int CmdTuneSamples(const char *Cmd)
 {
 int CmdTuneSamples(const char *Cmd)
 {

-       int timeout = 0;
+       int timeout = 0, arg = FLAG_TUNE_ALL;
+
+       if(*Cmd == 'l') {
+         arg = FLAG_TUNE_LF;
+       } else if (*Cmd == 'h') {
+         arg = FLAG_TUNE_HF;
+       } else if (*Cmd != '\0') {
+         PrintAndLog("use 'tune' or 'tune l' or 'tune h'");
+         return 0;
+       }
+

        printf("\nMeasuring antenna characteristics, please wait...");
 
        printf("\nMeasuring antenna characteristics, please wait...");
 

-       UsbCommand c = {CMD_MEASURE_ANTENNA_TUNING};
+       UsbCommand c = {CMD_MEASURE_ANTENNA_TUNING, {arg, 0, 0}};

        SendCommand(&c);
 
        UsbCommand resp;
        SendCommand(&c);
 
        UsbCommand resp;


@@ -1189,391 +1285,193 @@ int CmdTuneSamples(const char *Cmd)
        PrintAndLog("# LF antenna: %5.2f V @   134.00 kHz", vLf134/1000.0);
        PrintAndLog("# LF optimal: %5.2f V @%9.2f kHz", peakv/1000.0, 12000.0/(peakf+1));
        PrintAndLog("# HF antenna: %5.2f V @    13.56 MHz", vHf/1000.0);
        PrintAndLog("# LF antenna: %5.2f V @   134.00 kHz", vLf134/1000.0);
        PrintAndLog("# LF optimal: %5.2f V @%9.2f kHz", peakv/1000.0, 12000.0/(peakf+1));
        PrintAndLog("# HF antenna: %5.2f V @    13.56 MHz", vHf/1000.0);

-       if (peakv<2000)
+
+ #define LF_UNUSABLE_V         2948            // was 2000. Changed due to bugfix in voltage measurements. LF results are now 47% higher.
+ #define LF_MARGINAL_V         14739           // was 10000. Changed due to bugfix bug in voltage measurements. LF results are now 47% higher.
+ #define HF_UNUSABLE_V         3167            // was 2000. Changed due to bugfix in voltage measurements. HF results are now 58% higher.
+ #define HF_MARGINAL_V         7917            // was 5000. Changed due to bugfix in voltage measurements. HF results are now 58% higher.
+
+       if (peakv < LF_UNUSABLE_V)

                PrintAndLog("# Your LF antenna is unusable.");
                PrintAndLog("# Your LF antenna is unusable.");

-       else if (peakv<10000)
+       else if (peakv < LF_MARGINAL_V)

                PrintAndLog("# Your LF antenna is marginal.");
                PrintAndLog("# Your LF antenna is marginal.");

-       if (vHf<2000)
+       if (vHf < HF_UNUSABLE_V)

                PrintAndLog("# Your HF antenna is unusable.");
                PrintAndLog("# Your HF antenna is unusable.");

-       else if (vHf<5000)
+       else if (vHf < HF_MARGINAL_V)

                PrintAndLog("# Your HF antenna is marginal.");
 
                PrintAndLog("# Your HF antenna is marginal.");
 

-       for (int i = 0; i < 256; i++) {
-               GraphBuffer[i] = resp.d.asBytes[i] - 128;
+       if (peakv >= LF_UNUSABLE_V)     {
+               for (int i = 0; i < 256; i++) {
+                       GraphBuffer[i] = resp.d.asBytes[i] - 128;
+               }
+               PrintAndLog("Displaying LF tuning graph. Divisor 89 is 134khz, 95 is 125khz.\n");
+               PrintAndLog("\n");
+               GraphTraceLen = 256;
+               ShowGraphWindow();
+               RepaintGraphWindow();

        }
 
        }
 

-  PrintAndLog("Done! Divisor 89 is 134khz, 95 is 125khz.\n");
-  PrintAndLog("\n");
-       GraphTraceLen = 256;
-       ShowGraphWindow();
-
-  return 0;
+       return 0;

 }
 
 
 int CmdLoad(const char *Cmd)
 {
 }
 
 
 int CmdLoad(const char *Cmd)
 {

-   char filename[FILE_PATH_SIZE] = {0x00};
-   int len = 0;
+       char filename[FILE_PATH_SIZE] = {0x00};
+       int len = 0;

 
 

-   len = strlen(Cmd);
-   if (len > FILE_PATH_SIZE) len = FILE_PATH_SIZE;
-   memcpy(filename, Cmd, len);
+       len = strlen(Cmd);
+       if (len > FILE_PATH_SIZE) len = FILE_PATH_SIZE;
+       memcpy(filename, Cmd, len);

        
        

-   FILE *f = fopen(filename, "r");
-  if (!f) {
-     PrintAndLog("couldn't open '%s'", filename);
-    return 0;
-  }
-
-  GraphTraceLen = 0;
-  char line[80];
-  while (fgets(line, sizeof (line), f)) {
-    GraphBuffer[GraphTraceLen] = atoi(line);
-    GraphTraceLen++;
-  }
-  fclose(f);
-  PrintAndLog("loaded %d samples", GraphTraceLen);
-  RepaintGraphWindow();
-  return 0;
+       FILE *f = fopen(filename, "r");
+       if (!f) {
+                PrintAndLog("couldn't open '%s'", filename);
+               return 0;
+       }
+
+       GraphTraceLen = 0;
+       char line[80];
+       while (fgets(line, sizeof (line), f)) {
+               GraphBuffer[GraphTraceLen] = atoi(line);
+               GraphTraceLen++;
+       }
+       fclose(f);
+       PrintAndLog("loaded %d samples", GraphTraceLen);
+       setClockGrid(0,0);
+       DemodBufferLen = 0;
+       RepaintGraphWindow();
+       return 0;

 }
 
 int CmdLtrim(const char *Cmd)
 {
 }
 
 int CmdLtrim(const char *Cmd)
 {

-  int ds = atoi(Cmd);
-
-  for (int i = ds; i < GraphTraceLen; ++i)
-    GraphBuffer[i-ds] = GraphBuffer[i];
-  GraphTraceLen -= ds;
+       int ds = atoi(Cmd);
+       if (GraphTraceLen<=0) return 0;
+       for (int i = ds; i < GraphTraceLen; ++i)
+               GraphBuffer[i-ds] = GraphBuffer[i];
+       GraphTraceLen -= ds;

 
 

-  RepaintGraphWindow();
-  return 0;
+       RepaintGraphWindow();
+       return 0;

 }
 }

+
+// trim graph to input argument length

 int CmdRtrim(const char *Cmd)
 {
 int CmdRtrim(const char *Cmd)
 {

-  int ds = atoi(Cmd);
-
-  GraphTraceLen = ds;
-
-  RepaintGraphWindow();
-  return 0;
-}
-
-/*
- * Manchester demodulate a bitstream. The bitstream needs to be already in
- * the GraphBuffer as 0 and 1 values
- *
- * Give the clock rate as argument in order to help the sync - the algorithm
- * resyncs at each pulse anyway.
- *
- * Not optimized by any means, this is the 1st time I'm writing this type of
- * routine, feel free to improve...
- *
- * 1st argument: clock rate (as number of samples per clock rate)
- *               Typical values can be 64, 32, 128...
- */
-int CmdManchesterDemod(const char *Cmd)
-{
-  int i, j, invert= 0;
-  int bit;
-  int clock;
-  int lastval = 0;
-  int low = 0;
-  int high = 0;
-  int hithigh, hitlow, first;
-  int lc = 0;
-  int bitidx = 0;
-  int bit2idx = 0;
-  int warnings = 0;
-
-  /* check if we're inverting output */
-  if (*Cmd == 'i')
-  {
-    PrintAndLog("Inverting output");
-    invert = 1;
-    ++Cmd;
-    do
-      ++Cmd;
-    while(*Cmd == ' '); // in case a 2nd argument was given
-  }
-
-  /* Holds the decoded bitstream: each clock period contains 2 bits       */
-  /* later simplified to 1 bit after manchester decoding.                 */
-  /* Add 10 bits to allow for noisy / uncertain traces without aborting   */
-  /* int BitStream[GraphTraceLen*2/clock+10]; */
-
-  /* But it does not work if compiling on WIndows: therefore we just allocate a */
-  /* large array */
-  uint8_t BitStream[MAX_GRAPH_TRACE_LEN] = {0};
-
-  /* Detect high and lows */
-  for (i = 0; i < GraphTraceLen; i++)
-  {
-    if (GraphBuffer[i] > high)
-      high = GraphBuffer[i];
-    else if (GraphBuffer[i] < low)
-      low = GraphBuffer[i];
-  }
-
-  /* Get our clock */
-  clock = GetClock(Cmd, high, 1);
-
-  int tolerance = clock/4;
-
-  /* Detect first transition */
-  /* Lo-Hi (arbitrary)       */
-  /* skip to the first high */
-  for (i= 0; i < GraphTraceLen; i++)
-    if (GraphBuffer[i] == high)
-      break;
-  /* now look for the first low */
-  for (; i < GraphTraceLen; i++)
-  {
-    if (GraphBuffer[i] == low)
-    {
-      lastval = i;
-      break;
-    }
-  }
-
-  /* If we're not working with 1/0s, demod based off clock */
-  if (high != 1)
-  {
-    bit = 0; /* We assume the 1st bit is zero, it may not be
-              * the case: this routine (I think) has an init problem.
-              * Ed.
-              */
-    for (; i < (int)(GraphTraceLen / clock); i++)
-    {
-      hithigh = 0;
-      hitlow = 0;
-      first = 1;
-
-      /* Find out if we hit both high and low peaks */
-      for (j = 0; j < clock; j++)
-      {
-        if (GraphBuffer[(i * clock) + j] == high)
-          hithigh = 1;
-        else if (GraphBuffer[(i * clock) + j] == low)
-          hitlow = 1;
-
-        /* it doesn't count if it's the first part of our read
-           because it's really just trailing from the last sequence */
-        if (first && (hithigh || hitlow))
-          hithigh = hitlow = 0;
-        else
-          first = 0;
-
-        if (hithigh && hitlow)
-          break;
-      }
-
-      /* If we didn't hit both high and low peaks, we had a bit transition */
-      if (!hithigh || !hitlow)
-        bit ^= 1;
-
-      BitStream[bit2idx++] = bit ^ invert;
-    }
-  }
-
-  /* standard 1/0 bitstream */
-  else
-  {
-
-    /* Then detect duration between 2 successive transitions */
-    for (bitidx = 1; i < GraphTraceLen; i++)
-    {
-      if (GraphBuffer[i-1] != GraphBuffer[i])
-      {
-        lc = i-lastval;
-        lastval = i;
-
-        // Error check: if bitidx becomes too large, we do not
-        // have a Manchester encoded bitstream or the clock is really
-        // wrong!
-        if (bitidx > (GraphTraceLen*2/clock+8) ) {
-          PrintAndLog("Error: the clock you gave is probably wrong, aborting.");
-          return 0;
-        }
-        // Then switch depending on lc length:
-        // Tolerance is 1/4 of clock rate (arbitrary)
-        if (abs(lc-clock/2) < tolerance) {
-          // Short pulse : either "1" or "0"
-          BitStream[bitidx++]=GraphBuffer[i-1];
-        } else if (abs(lc-clock) < tolerance) {
-          // Long pulse: either "11" or "00"
-          BitStream[bitidx++]=GraphBuffer[i-1];
-          BitStream[bitidx++]=GraphBuffer[i-1];
-        } else {
-        // Error
-          warnings++;
-          PrintAndLog("Warning: Manchester decode error for pulse width detection.");
-          PrintAndLog("(too many of those messages mean either the stream is not Manchester encoded, or clock is wrong)");
-
-          if (warnings > 10)
-          {
-            PrintAndLog("Error: too many detection errors, aborting.");
-            return 0;
-          }
-        }
-      }
-    }
-
-    // At this stage, we now have a bitstream of "01" ("1") or "10" ("0"), parse it into final decoded bitstream
-    // Actually, we overwrite BitStream with the new decoded bitstream, we just need to be careful
-    // to stop output at the final bitidx2 value, not bitidx
-    for (i = 0; i < bitidx; i += 2) {
-      if ((BitStream[i] == 0) && (BitStream[i+1] == 1)) {
-        BitStream[bit2idx++] = 1 ^ invert;
-      } else if ((BitStream[i] == 1) && (BitStream[i+1] == 0)) {
-        BitStream[bit2idx++] = 0 ^ invert;
-      } else {
-        // We cannot end up in this state, this means we are unsynchronized,
-        // move up 1 bit:
-        i++;
-        warnings++;
-        PrintAndLog("Unsynchronized, resync...");
-        PrintAndLog("(too many of those messages mean the stream is not Manchester encoded)");
-
-        if (warnings > 10)
-        {
-          PrintAndLog("Error: too many decode errors, aborting.");
-          return 0;
-        }
-      }
-    }
-  }
-
-  PrintAndLog("Manchester decoded bitstream");
-  // Now output the bitstream to the scrollback by line of 16 bits
-  for (i = 0; i < (bit2idx-16); i+=16) {
-    PrintAndLog("%i %i %i %i %i %i %i %i %i %i %i %i %i %i %i %i",
-      BitStream[i],
-      BitStream[i+1],
-      BitStream[i+2],
-      BitStream[i+3],
-      BitStream[i+4],
-      BitStream[i+5],
-      BitStream[i+6],
-      BitStream[i+7],
-      BitStream[i+8],
-      BitStream[i+9],
-      BitStream[i+10],
-      BitStream[i+11],
-      BitStream[i+12],
-      BitStream[i+13],
-      BitStream[i+14],
-      BitStream[i+15]);
-  }
-  return 0;
-}
-
-/* Modulate our data into manchester */
-int CmdManchesterMod(const char *Cmd)
-{
-  int i, j;
-  int clock;
-  int bit, lastbit, wave;
+       int ds = atoi(Cmd);

 
 

-  /* Get our clock */
-  clock = GetClock(Cmd, 0, 1);
+       GraphTraceLen = ds;

 
 

-  wave = 0;
-  lastbit = 1;
-  for (i = 0; i < (int)(GraphTraceLen / clock); i++)
-  {
-    bit = GraphBuffer[i * clock] ^ 1;
+       RepaintGraphWindow();
+       return 0;
+}

 
 

-    for (j = 0; j < (int)(clock/2); j++)
-      GraphBuffer[(i * clock) + j] = bit ^ lastbit ^ wave;
-    for (j = (int)(clock/2); j < clock; j++)
-      GraphBuffer[(i * clock) + j] = bit ^ lastbit ^ wave ^ 1;
+// trim graph (middle) piece
+int CmdMtrim(const char *Cmd) {
+       int start = 0, stop = 0;
+       sscanf(Cmd, "%i %i", &start, &stop);

 
 

-    /* Keep track of how we start our wave and if we changed or not this time */
-    wave ^= bit ^ lastbit;
-    lastbit = bit;
-  }
+       if (start > GraphTraceLen       || stop > GraphTraceLen || start > stop) return 0;
+       start++; //leave start position sample

 
 

-  RepaintGraphWindow();
-  return 0;
+       GraphTraceLen = stop - start;
+       for (int i = 0; i < GraphTraceLen; i++) {
+               GraphBuffer[i] = GraphBuffer[start+i];
+       }
+       return 0;

 }
 
 }
 

+

 int CmdNorm(const char *Cmd)
 {
 int CmdNorm(const char *Cmd)
 {

-  int i;
-  int max = INT_MIN, min = INT_MAX;
-
-  for (i = 10; i < GraphTraceLen; ++i) {
-    if (GraphBuffer[i] > max)
-      max = GraphBuffer[i];
-    if (GraphBuffer[i] < min)
-      min = GraphBuffer[i];
-  }
-
-  if (max != min) {
-    for (i = 0; i < GraphTraceLen; ++i) {
-                       GraphBuffer[i] = (GraphBuffer[i] - ((max + min) / 2)) * 256 /
-        (max - min);
+       int i;
+       int max = INT_MIN, min = INT_MAX;
+
+       for (i = 10; i < GraphTraceLen; ++i) {
+               if (GraphBuffer[i] > max)
+                       max = GraphBuffer[i];
+               if (GraphBuffer[i] < min)
+                       min = GraphBuffer[i];
+       }
+
+       if (max != min) {
+               for (i = 0; i < GraphTraceLen; ++i) {
+                       GraphBuffer[i] = ((long)(GraphBuffer[i] - ((max + min) / 2)) * 256) / (max - min);

                                //marshmelow: adjusted *1000 to *256 to make +/- 128 so demod commands still work
                                //marshmelow: adjusted *1000 to *256 to make +/- 128 so demod commands still work

-    }
-  }
-  RepaintGraphWindow();
-  return 0;
+               }
+       }
+       RepaintGraphWindow();
+       return 0;

 }
 
 int CmdPlot(const char *Cmd)
 {
 }
 
 int CmdPlot(const char *Cmd)
 {

-  ShowGraphWindow();
-  return 0;
+       ShowGraphWindow();
+       return 0;

 }
 
 int CmdSave(const char *Cmd)
 {
 }
 
 int CmdSave(const char *Cmd)
 {

-   char filename[FILE_PATH_SIZE] = {0x00};
-   int len = 0;
-
-   len = strlen(Cmd);
-   if (len > FILE_PATH_SIZE) len = FILE_PATH_SIZE;
-   memcpy(filename, Cmd, len);
-   
-
-  FILE *f = fopen(filename, "w");
-  if(!f) {
-    PrintAndLog("couldn't open '%s'", filename);
-    return 0;
-  }
-  int i;
-  for (i = 0; i < GraphTraceLen; i++) {
-    fprintf(f, "%d\n", GraphBuffer[i]);
-  }
-  fclose(f);
-  PrintAndLog("saved to '%s'", Cmd);
-  return 0;
+       char filename[FILE_PATH_SIZE] = {0x00};
+       int len = 0;
+
+       len = strlen(Cmd);
+       if (len > FILE_PATH_SIZE) len = FILE_PATH_SIZE;
+       memcpy(filename, Cmd, len);
+        
+
+       FILE *f = fopen(filename, "w");
+       if(!f) {
+               PrintAndLog("couldn't open '%s'", filename);
+               return 0;
+       }
+       int i;
+       for (i = 0; i < GraphTraceLen; i++) {
+               fprintf(f, "%d\n", GraphBuffer[i]);
+       }
+       fclose(f);
+       PrintAndLog("saved to '%s'", Cmd);
+       return 0;

 }
 
 int CmdScale(const char *Cmd)
 {
 }
 
 int CmdScale(const char *Cmd)
 {

-  CursorScaleFactor = atoi(Cmd);
-  if (CursorScaleFactor == 0) {
-    PrintAndLog("bad, can't have zero scale");
-    CursorScaleFactor = 1;
-  }
-  RepaintGraphWindow();
-  return 0;
+       CursorScaleFactor = atoi(Cmd);
+       if (CursorScaleFactor == 0) {
+               PrintAndLog("bad, can't have zero scale");
+               CursorScaleFactor = 1;
+       }
+       RepaintGraphWindow();
+       return 0;

 }
 
 }
 

-int CmdThreshold(const char *Cmd)
+int directionalThreshold(const int* in, int *out, size_t len, int8_t up, int8_t down)

 {
 {

-  int threshold = atoi(Cmd);
-
-  for (int i = 0; i < GraphTraceLen; ++i) {
-    if (GraphBuffer[i] >= threshold)
-      GraphBuffer[i] = 1;
-    else
-      GraphBuffer[i] = -1;
-  }
-  RepaintGraphWindow();
-  return 0;
+       int lastValue = in[0];
+       out[0] = 0; // Will be changed at the end, but init 0 as we adjust to last samples value if no threshold kicks in.
+
+       for (int i = 1; i < len; ++i) {
+               // Apply first threshold to samples heading up
+               if (in[i] >= up && in[i] > lastValue)
+               {
+                       lastValue = out[i]; // Buffer last value as we overwrite it.
+                       out[i] = 1;
+               }
+               // Apply second threshold to samples heading down
+               else if (in[i] <= down && in[i] < lastValue)
+               {
+                       lastValue = out[i]; // Buffer last value as we overwrite it.
+                       out[i] = -1;
+               }
+               else
+               {
+                       lastValue = out[i]; // Buffer last value as we overwrite it.
+                       out[i] = out[i-1];
+               }
+       }
+       out[0] = out[1]; // Align with first edited sample.
+       return 0;

 }
 
 int CmdDirectionalThreshold(const char *Cmd)
 }
 
 int CmdDirectionalThreshold(const char *Cmd)


@@ -1581,118 +1479,381 @@ int CmdDirectionalThreshold(const char *Cmd)
        int8_t upThres = param_get8(Cmd, 0);
        int8_t downThres = param_get8(Cmd, 1);
 
        int8_t upThres = param_get8(Cmd, 0);
        int8_t downThres = param_get8(Cmd, 1);
 

-  printf("Applying Up Threshold: %d, Down Threshold: %d\n", upThres, downThres);
-
-  int lastValue = GraphBuffer[0];
-  GraphBuffer[0] = 0; // Will be changed at the end, but init 0 as we adjust to last samples value if no threshold kicks in.
-
-  for (int i = 1; i < GraphTraceLen; ++i) {
-    // Apply first threshold to samples heading up
-    if (GraphBuffer[i] >= upThres && GraphBuffer[i] > lastValue)
-    {
-      lastValue = GraphBuffer[i]; // Buffer last value as we overwrite it.
-      GraphBuffer[i] = 1;
-    }
-    // Apply second threshold to samples heading down
-    else if (GraphBuffer[i] <= downThres && GraphBuffer[i] < lastValue)
-    {
-      lastValue = GraphBuffer[i]; // Buffer last value as we overwrite it.
-      GraphBuffer[i] = -1;
-    }
-    else
-    {
-      lastValue = GraphBuffer[i]; // Buffer last value as we overwrite it.
-      GraphBuffer[i] = GraphBuffer[i-1];
-
-    }
-  }
-  GraphBuffer[0] = GraphBuffer[1]; // Aline with first edited sample.
-  RepaintGraphWindow();
-  return 0;
+       printf("Applying Up Threshold: %d, Down Threshold: %d\n", upThres, downThres);
+
+       directionalThreshold(GraphBuffer, GraphBuffer,GraphTraceLen, upThres, downThres);
+       RepaintGraphWindow();
+       return 0;

 }
 
 int CmdZerocrossings(const char *Cmd)
 {
 }
 
 int CmdZerocrossings(const char *Cmd)
 {

-  // Zero-crossings aren't meaningful unless the signal is zero-mean.
-  CmdHpf("");
-
-  int sign = 1;
-  int zc = 0;
-  int lastZc = 0;
-
-  for (int i = 0; i < GraphTraceLen; ++i) {
-    if (GraphBuffer[i] * sign >= 0) {
-      // No change in sign, reproduce the previous sample count.
-      zc++;
-      GraphBuffer[i] = lastZc;
-    } else {
-      // Change in sign, reset the sample count.
-      sign = -sign;
-      GraphBuffer[i] = lastZc;
-      if (sign > 0) {
-        lastZc = zc;
-        zc = 0;
-      }
-    }
-  }
-
-  RepaintGraphWindow();
-  return 0;
+       // Zero-crossings aren't meaningful unless the signal is zero-mean.
+       CmdHpf("");
+
+       int sign = 1;
+       int zc = 0;
+       int lastZc = 0;
+
+       for (int i = 0; i < GraphTraceLen; ++i) {
+               if (GraphBuffer[i] * sign >= 0) {
+                       // No change in sign, reproduce the previous sample count.
+                       zc++;
+                       GraphBuffer[i] = lastZc;
+               } else {
+                       // Change in sign, reset the sample count.
+                       sign = -sign;
+                       GraphBuffer[i] = lastZc;
+                       if (sign > 0) {
+                               lastZc = zc;
+                               zc = 0;
+                       }
+               }
+       }
+
+       RepaintGraphWindow();
+       return 0;
+}
+
+int usage_data_bin2hex(){
+               PrintAndLog("Usage: data bin2hex <binary_digits>");
+               PrintAndLog("       This function will ignore all characters not 1 or 0 (but stop reading on whitespace)");
+               return 0;
+}
+
+/**
+ * @brief Utility for conversion via cmdline.
+ * @param Cmd
+ * @return
+ */
+int Cmdbin2hex(const char *Cmd)
+{
+       int bg =0, en =0;
+       if(param_getptr(Cmd, &bg, &en, 0))
+       {
+               return usage_data_bin2hex();
+       }
+       //Number of digits supplied as argument
+       size_t length = en  - bg +1;
+       size_t bytelen = (length+7) / 8;
+       uint8_t* arr = (uint8_t *) malloc(bytelen);
+       memset(arr, 0, bytelen);
+       BitstreamOut bout = { arr, 0, 0 };
+
+       for(; bg <= en ;bg++)
+       {
+               char c = Cmd[bg];
+               if( c == '1')   pushBit(&bout, 1);
+               else if( c == '0')      pushBit(&bout, 0);
+               else PrintAndLog("Ignoring '%c'", c);
+       }
+
+       if(bout.numbits % 8 != 0)
+       {
+               printf("[padded with %d zeroes]\n", 8-(bout.numbits % 8));
+       }
+
+       //Uses printf instead of PrintAndLog since the latter
+       // adds linebreaks to each printout - this way was more convenient since we don't have to
+       // allocate a string and write to that first...
+       for(size_t x = 0; x  < bytelen ; x++)
+       {
+               printf("%02X", arr[x]);
+       }
+       printf("\n");
+       free(arr);
+       return 0;
+}
+
+int usage_data_hex2bin() {
+       PrintAndLog("Usage: data hex2bin <hex_digits>");
+       PrintAndLog("       This function will ignore all non-hexadecimal characters (but stop reading on whitespace)");
+       return 0;
+

 }
 
 }
 

+int Cmdhex2bin(const char *Cmd)
+{
+       int bg =0, en =0;
+       if(param_getptr(Cmd, &bg, &en, 0))
+       {
+               return usage_data_hex2bin();
+       }
+
+
+       while(bg <= en )
+       {
+               char x = Cmd[bg++];
+               // capitalize
+               if (x >= 'a' && x <= 'f')
+                       x -= 32;
+               // convert to numeric value
+               if (x >= '0' && x <= '9')
+                       x -= '0';
+               else if (x >= 'A' && x <= 'F')
+                       x -= 'A' - 10;
+               else
+                       continue;
+
+               //Uses printf instead of PrintAndLog since the latter
+               // adds linebreaks to each printout - this way was more convenient since we don't have to
+               // allocate a string and write to that first...
+
+               for(int i= 0 ; i < 4 ; ++i)
+                       printf("%d",(x >> (3 - i)) & 1);
+       }
+       printf("\n");
+
+       return 0;
+}
+
+       /* // example of FSK2 RF/50 Tones
+       static const int LowTone[]  = {
+       1,  1,  1,  1,  1, -1, -1, -1, -1, -1,
+       1,  1,  1,  1,  1, -1, -1, -1, -1, -1,
+       1,  1,  1,  1,  1, -1, -1, -1, -1, -1,
+       1,  1,  1,  1,  1, -1, -1, -1, -1, -1,
+       1,  1,  1,  1,  1, -1, -1, -1, -1, -1
+       };
+       static const int HighTone[] = {
+       1,  1,  1,  1,  1,     -1, -1, -1, -1, // note one extra 1 to padd due to 50/8 remainder (1/2 the remainder)
+       1,  1,  1,  1,         -1, -1, -1, -1,
+       1,  1,  1,  1,         -1, -1, -1, -1,
+       1,  1,  1,  1,         -1, -1, -1, -1,
+       1,  1,  1,  1,         -1, -1, -1, -1,
+       1,  1,  1,  1,     -1, -1, -1, -1, -1, // note one extra -1 to padd due to 50/8 remainder
+       };
+       */
+void GetHiLoTone(int *LowTone, int *HighTone, int clk, int LowToneFC, int HighToneFC) {
+       int i,j=0;
+       int Left_Modifier = ((clk % LowToneFC) % 2) + ((clk % LowToneFC)/2);
+       int Right_Modifier = (clk % LowToneFC) / 2;
+       //int HighToneMod = clk mod HighToneFC;
+       int LeftHalfFCCnt = (LowToneFC % 2) + (LowToneFC/2); //truncate
+       int FCs_per_clk = clk/LowToneFC;
+       
+       // need to correctly split up the clock to field clocks.
+       // First attempt uses modifiers on each end to make up for when FCs don't evenly divide into Clk
+
+       // start with LowTone
+       // set extra 1 modifiers to make up for when FC doesn't divide evenly into Clk
+       for (i = 0; i < Left_Modifier; i++) {
+               LowTone[i] = 1;
+       }
+
+       // loop # of field clocks inside the main clock
+       for (i = 0; i < (FCs_per_clk); i++) {
+               // loop # of samples per field clock
+               for (j = 0; j < LowToneFC; j++) {
+                       LowTone[(i*LowToneFC)+Left_Modifier+j] = ( j < LeftHalfFCCnt ) ? 1 : -1;
+               }
+       }
+
+       int k;
+       // add last -1 modifiers
+       for (k = 0; k < Right_Modifier; k++) {
+               LowTone[((i-1)*LowToneFC)+Left_Modifier+j+k] = -1;
+       }
+
+       // now do hightone
+       Left_Modifier = ((clk % HighToneFC) % 2) + ((clk % HighToneFC)/2);
+       Right_Modifier = (clk % HighToneFC) / 2;
+       LeftHalfFCCnt = (HighToneFC % 2) + (HighToneFC/2); //truncate
+       FCs_per_clk = clk/HighToneFC;
+
+       for (i = 0; i < Left_Modifier; i++) {
+               HighTone[i] = 1;
+       }
+
+       // loop # of field clocks inside the main clock
+       for (i = 0; i < (FCs_per_clk); i++) {
+               // loop # of samples per field clock
+               for (j = 0; j < HighToneFC; j++) {
+                       HighTone[(i*HighToneFC)+Left_Modifier+j] = ( j < LeftHalfFCCnt ) ? 1 : -1;
+               }
+       }
+
+       // add last -1 modifiers
+       for (k = 0; k < Right_Modifier; k++) {
+               PrintAndLog("(i-1)*HighToneFC+lm+j+k %i",((i-1)*HighToneFC)+Left_Modifier+j+k);
+               HighTone[((i-1)*HighToneFC)+Left_Modifier+j+k] = -1;
+       }
+       if (g_debugMode == 2) {
+               for ( i = 0; i < clk; i++) {
+                       PrintAndLog("Low: %i,  High: %i",LowTone[i],HighTone[i]);
+               }
+       }
+}
+
+//old CmdFSKdemod adapted by marshmellow 
+//converts FSK to clear NRZ style wave.  (or demodulates)
+int FSKToNRZ(int *data, int *dataLen, int clk, int LowToneFC, int HighToneFC) {
+       uint8_t ans=0;
+       if (clk == 0 || LowToneFC == 0 || HighToneFC == 0) {
+               int firstClockEdge=0;
+               ans = fskClocks((uint8_t *) &LowToneFC, (uint8_t *) &HighToneFC, (uint8_t *) &clk, false, &firstClockEdge);
+               if (g_debugMode > 1) {
+                       PrintAndLog     ("DEBUG FSKtoNRZ: detected clocks: fc_low %i, fc_high %i, clk %i, firstClockEdge %i, ans %u", LowToneFC, HighToneFC, clk, firstClockEdge, ans);
+               }
+       }
+       // currently only know fsk modulations with field clocks < 10 samples and > 4 samples. filter out to remove false positives (and possibly destroying ask/psk modulated waves...)
+       if (ans == 0 || clk == 0 || LowToneFC == 0 || HighToneFC == 0 || LowToneFC > 10 || HighToneFC   < 4) {
+               if (g_debugMode > 1) {
+                       PrintAndLog     ("DEBUG FSKtoNRZ: no fsk clocks found");
+               }
+               return 0;
+       }
+       int LowTone[clk];
+       int HighTone[clk];
+       GetHiLoTone(LowTone, HighTone, clk, LowToneFC, HighToneFC);
+       
+       int i, j;
+
+       // loop through ([all samples] - clk)
+       for (i = 0; i < *dataLen - clk; ++i) {
+               int lowSum = 0, highSum = 0;
+
+               // sum all samples together starting from this sample for [clk] samples for each tone (multiply tone value with sample data)
+               for (j = 0; j < clk; ++j) {
+                       lowSum += LowTone[j] * data[i+j];
+                       highSum += HighTone[j] * data[i + j];
+               }
+               // get abs( [average sample value per clk] * 100 )  (or a rolling average of sorts)
+               lowSum = abs(100 * lowSum / clk);
+               highSum = abs(100 * highSum / clk);
+               // save these back to buffer for later use
+               data[i] = (highSum << 16) | lowSum;
+       }
+
+       // now we have the abs( [average sample value per clk] * 100 ) for each tone
+       //   loop through again [all samples] - clk - 16  
+       //                  note why 16???  is 16 the largest FC? changed to LowToneFC as that should be the > fc
+       for(i = 0; i < *dataLen - clk - LowToneFC; ++i) {
+               int lowTot = 0, highTot = 0;
+
+               // sum a field clock width of abs( [average sample values per clk] * 100) for each tone
+               for (j = 0; j < LowToneFC; ++j) {  //10 for fsk2
+                 lowTot += (data[i + j] & 0xffff);
+               }
+               for (j = 0; j < HighToneFC; j++) {  //8 for fsk2
+                 highTot += (data[i + j] >> 16);
+               }
+
+               // subtract the sum of lowTone averages by the sum of highTone averages as it 
+               //   and write back the new graph value 
+               data[i] = lowTot - highTot;
+       }
+       // update dataLen to what we put back to the data sample buffer
+       *dataLen -= (clk + LowToneFC);
+       return 0;
+}
+
+int usage_data_fsktonrz() {
+               PrintAndLog("Usage: data fsktonrz c <clock> l <fc_low> f <fc_high>");
+               PrintAndLog("Options:        ");
+               PrintAndLog("       h            This help");
+               PrintAndLog("       c <clock>    enter the a clock (omit to autodetect)");
+               PrintAndLog("       l <fc_low>   enter a field clock (omit to autodetect)");
+               PrintAndLog("       f <fc_high>  enter a field clock (omit to autodetect)");
+               return 0;       
+}
+
+int CmdFSKToNRZ(const char *Cmd) {
+       // take clk, fc_low, fc_high 
+       //   blank = auto;
+       bool errors = false;
+       int clk = 0;
+       char cmdp = 0;
+       int fc_low = 10, fc_high = 8;
+       while(param_getchar(Cmd, cmdp) != 0x00)
+       {
+               switch(param_getchar(Cmd, cmdp))
+               {
+               case 'h':
+               case 'H':
+                       return usage_data_fsktonrz();
+               case 'C':
+               case 'c':
+                       clk = param_get32ex(Cmd, cmdp+1, 0, 10);
+                       cmdp += 2;
+                       break;
+               case 'F':
+               case 'f':
+                       fc_high = param_get32ex(Cmd, cmdp+1, 0, 10);
+                       cmdp += 2;
+                       break;
+               case 'L':
+               case 'l':
+                       fc_low = param_get32ex(Cmd, cmdp+1, 0, 10);
+                       cmdp += 2;
+                       break;
+               default:
+                       PrintAndLog("Unknown parameter '%c'", param_getchar(Cmd, cmdp));
+                       errors = true;
+                       break;
+               }
+               if(errors) break;
+       }
+       //Validations
+       if(errors) return usage_data_fsktonrz();
+
+       setClockGrid(0,0);
+       DemodBufferLen = 0;
+       int ans = FSKToNRZ(GraphBuffer, &GraphTraceLen, clk, fc_low, fc_high);
+       CmdNorm("");
+       RepaintGraphWindow();
+       return ans;
+}
+
+

 static command_t CommandTable[] =
 {
 static command_t CommandTable[] =
 {

-  {"help",          CmdHelp,            1, "This help"},
-  {"amp",           CmdAmp,             1, "Amplify peaks"},
-  {"askdemod",      Cmdaskdemod,        1, "<0 or 1> -- Attempt to demodulate simple ASK tags"},
-       {"askmandemod",   Cmdaskmandemod,     1, "[clock] [invert<0|1>] -- Attempt to demodulate ASK/Manchester tags and output binary (args optional[clock will try Auto-detect])"},
-       {"askrawdemod",   Cmdaskrawdemod,     1, "[clock] [invert<0|1>] -- Attempt to demodulate ASK tags and output binary (args optional[clock will try Auto-detect])"},
-  {"autocorr",      CmdAutoCorr,        1, "<window length> -- Autocorrelation over window"},
-  {"biphaserawdecode",CmdBiphaseDecodeRaw,1,"[offset] Biphase decode binary stream already in graph buffer (offset = bit to start decode from)"},
-  {"bitsamples",    CmdBitsamples,      0, "Get raw samples as bitstring"},
-  {"bitstream",     CmdBitstream,       1, "[clock rate] -- Convert waveform into a bitstream"},
-  {"buffclear",     CmdBuffClear,       1, "Clear sample buffer and graph window"},
-  {"dec",           CmdDec,             1, "Decimate samples"},
-       {"detectclock",   CmdDetectClockRate, 1, "Detect ASK clock rate"},
-  {"fskdemod",      CmdFSKdemod,        1, "Demodulate graph window as a HID FSK"},
-  {"fskhiddemod",   CmdFSKdemodHID,     1, "Demodulate graph window as a HID FSK using raw"},
-  {"fskiodemod",    CmdFSKdemodIO,      1, "Demodulate graph window as an IO Prox FSK using raw"},
-       {"fskrawdemod",   CmdFSKrawdemod,     1, "[clock rate] [invert] [rchigh] [rclow] Demodulate graph window from FSK to binary (clock = 50)(invert = 1|0)(rchigh = 10)(rclow=8)"},
-  {"grid",          CmdGrid,            1, "<x> <y> -- overlay grid on graph window, use zero value to turn off either"},
-       {"hexsamples",    CmdHexsamples,      0, "<bytes> [<offset>] -- Dump big buffer as hex bytes"},
-  {"hide",          CmdHide,            1, "Hide graph window"},
-  {"hpf",           CmdHpf,             1, "Remove DC offset from trace"},
-  {"load",          CmdLoad,            1, "<filename> -- Load trace (to graph window"},
-  {"ltrim",         CmdLtrim,           1, "<samples> -- Trim samples from left of trace"},
-  {"rtrim",         CmdRtrim,           1, "<location to end trace> -- Trim samples from right of trace"},
-  {"mandemod",      CmdManchesterDemod, 1, "[i] [clock rate] -- Manchester demodulate binary stream (option 'i' to invert output)"},
-  {"manrawdecode",  Cmdmandecoderaw,    1, "Manchester decode binary stream already in graph buffer"},
-  {"manmod",        CmdManchesterMod,   1, "[clock rate] -- Manchester modulate a binary stream"},
-       {"norm",          CmdNorm,            1, "Normalize max/min to +/-128"},
-  {"plot",          CmdPlot,            1, "Show graph window (hit 'h' in window for keystroke help)"},
-       {"pskclean",      CmdPskClean,        1, "Attempt to clean psk wave"},
-       {"pskdetectclock",CmdDetectNRZpskClockRate, 1, "Detect ASK, PSK, or NRZ clock rate"},
-       {"pskindalademod",CmdIndalaDecode,    1, "[clock] [invert<0|1>] -- Attempt to demodulate psk indala tags and output ID binary & hex (args optional[clock will try Auto-detect])"},
-       {"psknrzrawdemod",CmdpskNRZrawDemod,  1, "[clock] [invert<0|1>] -- Attempt to demodulate psk or nrz tags and output binary (args optional[clock will try Auto-detect])"},
-  {"samples",       CmdSamples,         0, "[512 - 40000] -- Get raw samples for graph window"},
-  {"save",          CmdSave,            1, "<filename> -- Save trace (from graph window)"},
-  {"scale",         CmdScale,           1, "<int> -- Set cursor display scale"},
-  {"threshold",     CmdThreshold,       1, "<threshold> -- Maximize/minimize every value in the graph window depending on threshold"},
-       {"dirthreshold",  CmdDirectionalThreshold,   1, "<thres up> <thres down> -- Max rising higher up-thres/ Min falling lower down-thres, keep rest as prev."},
-       {"tune",          CmdTuneSamples,     0, "Get hw tune samples for graph window"},
-       {"undec",         CmdUndec,         1, "Un-decimate samples by 2"},
-       {"zerocrossings", CmdZerocrossings,   1, "Count time between zero-crossings"},
-  {NULL, NULL, 0, NULL}
+       {"help",            CmdHelp,            1, "This help"},
+       {"askedgedetect",   CmdAskEdgeDetect,   1, "[threshold] Adjust Graph for manual ask demod using the length of sample differences to detect the edge of a wave (use 20-45, def:25)"},
+       {"autocorr",        CmdAutoCorr,        1, "[window length] [g] -- Autocorrelation over window - g to save back to GraphBuffer (overwrite)"},
+       {"biphaserawdecode",CmdBiphaseDecodeRaw,1, "[offset] [invert<0|1>] [maxErr] -- Biphase decode bin stream in DemodBuffer (offset = 0|1 bits to shift the decode start)"},
+       {"bin2hex",         Cmdbin2hex,         1, "bin2hex <digits>     -- Converts binary to hexadecimal"},
+       {"bitsamples",      CmdBitsamples,      0, "Get raw samples as bitstring"},
+       {"buffclear",       CmdBuffClear,       1, "Clear sample buffer and graph window"},
+       {"dec",             CmdDec,             1, "Decimate samples"},
+       {"detectclock",     CmdDetectClockRate, 1, "[modulation] Detect clock rate of wave in GraphBuffer (options: 'a','f','n','p' for ask, fsk, nrz, psk respectively)"},
+       {"fsktonrz",        CmdFSKToNRZ,        1, "Convert fsk2 to nrz wave for alternate fsk demodulating (for weak fsk)"},
+       {"getbitstream",    CmdGetBitStream,    1, "Convert GraphBuffer's >=1 values to 1 and <1 to 0"},
+       {"grid",            CmdGrid,            1, "<x> <y> -- overlay grid on graph window, use zero value to turn off either"},
+       {"hexsamples",      CmdHexsamples,      0, "<bytes> [<offset>] -- Dump big buffer as hex bytes"},
+       {"hex2bin",         Cmdhex2bin,         1, "hex2bin <hexadecimal> -- Converts hexadecimal to binary"},
+       {"hide",            CmdHide,            1, "Hide graph window"},
+       {"hpf",             CmdHpf,             1, "Remove DC offset from trace"},
+       {"load",            CmdLoad,            1, "<filename> -- Load trace (to graph window"},
+       {"ltrim",           CmdLtrim,           1, "<samples> -- Trim samples from left of trace"},
+       {"rtrim",           CmdRtrim,           1, "<location to end trace> -- Trim samples from right of trace"},
+       {"mtrim",           CmdMtrim,           1, "<start> <stop> -- Trim out samples from the specified start to the specified stop"},
+       {"manrawdecode",    Cmdmandecoderaw,    1, "[invert] [maxErr] -- Manchester decode binary stream in DemodBuffer"},
+       {"norm",            CmdNorm,            1, "Normalize max/min to +/-128"},
+       {"plot",            CmdPlot,            1, "Show graph window (hit 'h' in window for keystroke help)"},
+       {"printdemodbuffer",CmdPrintDemodBuff,  1, "[x] [o] <offset> [l] <length> -- print the data in the DemodBuffer - 'x' for hex output"},
+       {"rawdemod",        CmdRawDemod,        1, "[modulation] ... <options> -see help (h option) -- Demodulate the data in the GraphBuffer and output binary"},  
+       {"samples",         CmdSamples,         0, "[512 - 40000] -- Get raw samples for graph window (GraphBuffer)"},
+       {"save",            CmdSave,            1, "<filename> -- Save trace (from graph window)"},
+       {"setgraphmarkers", CmdSetGraphMarkers, 1, "[orange_marker] [blue_marker] (in graph window)"},
+       {"scale",           CmdScale,           1, "<int> -- Set cursor display scale"},
+       {"setdebugmode",    CmdSetDebugMode,    1, "<0|1|2> -- Turn on or off Debugging Level for lf demods"},
+       {"shiftgraphzero",  CmdGraphShiftZero,  1, "<shift> -- Shift 0 for Graphed wave + or - shift value"},
+       {"dirthreshold",    CmdDirectionalThreshold,   1, "<thres up> <thres down> -- Max rising higher up-thres/ Min falling lower down-thres, keep rest as prev."},
+       {"tune",            CmdTuneSamples,     0, "Get hw tune samples for graph window"},
+       {"undec",           CmdUndec,           1, "Un-decimate samples by 2"},
+       {"zerocrossings",   CmdZerocrossings,   1, "Count time between zero-crossings"},
+       {NULL, NULL, 0, NULL}

 };
 
 int CmdData(const char *Cmd)
 {
 };
 
 int CmdData(const char *Cmd)
 {

-  CmdsParse(CommandTable, Cmd);
-  return 0;
+       CmdsParse(CommandTable, Cmd);
+       return 0;

 }
 
 int CmdHelp(const char *Cmd)
 {
 }
 
 int CmdHelp(const char *Cmd)
 {

-  CmdsHelp(CommandTable);
-  return 0;
+       CmdsHelp(CommandTable);
+       return 0;

 }
 }